KEGG   Sphingobium sp. RAC03: BSY17_64
Entry
BSY17_64          CDS       T04461                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphr  Sphingobium sp. RAC03
Pathway
sphr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BSY17_64 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphr03400]
    BSY17_64 (ligD)
Enzymes [BR:sphr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BSY17_64 (ligD)
DNA repair and recombination proteins [BR:sphr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BSY17_64 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AOF95844
UniProt: A0A1B3MRX3
LinkDB
Position
complement(70799..73291)
AA seq 830 aa
MTRTQTKSADESLATYRAKRDFGRTAEPSGAKLPSTGNGFVVQKHAATRLHYDFRLELDG
VLVSWAITRGPSVNPDDKRLAVRTEDHPLDYARFEGTIPKGEYGGGTVMLWDNGTWGSIP
GKDPRKTLPEGHLHFILHGRRMQGEWILFRLKPRGKEKGENWILRKVHDAFAGGSDDLVG
IHLTSVDTGRTMDEIAAGKAVRRRKGAKPAAAPSLSAGKRRKAASALPPFQPVQLAALVD
HVPSGDRWIHELKYDGYRTLLAMGGGEGRAYTRSGLDWSDRFAGLIGDTLTLDAASALID
GEAVVILPDGRTSFQALQAAFKGDPGKIDYVAFDLLELDGEDLTQRPLLERKQMLAALIG
EGRGHLRYSDHIVGRGEELLKSFCSAGLEGVISKRVDARYSGSRSGSWVKTKCIRRQEFV
IVGWTPSEKQRGFRSLLLGVNEKGKLRFAGKVGTGFTGDEIDRLMDLMAPLEEKTATVEA
PRAAVRGAHWIKPKLVAEVAYIEFTDEGVLRHSSYLGLRGDKKPEAVVLEIEAPVATTAD
PAATSGVKISNRDRMIFPEGKLTKGELADYYEAVAQIMLPWAGSRPISLVRCPQGRDKKC
FFQKHDAGSFGDDVKQVGILEKDGHQEPYLFVDTPAGLLTCVQMGTIEFHGWGARIEDVE
KADRLVFDLDPDEGLDFKDVVSAAFHLQDVLGQMGLVTFPMVTGGKGVHVIAPLTPTAEW
PQVKDFAHRFAMALAQADPERFTAALAKAKRTGKIFIDYLRNQRGATAVMPYSARSRPFA
PIAVPLTWEELRDLDGPNHWHIGDAAEMLKRVASKDLAHWGRADQILPDL
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgaccaggacacagaccaagtcggcagacgagagccttgccacttatcgggccaagcga
gactttgggcggaccgccgagccttcgggtgcgaagcttcccagcaccggcaacggcttc
gtcgtccaaaaacatgcggcgacacgtcttcattatgatttccgccttgagttagatggc
gtgctcgtcagctgggccatcacacgcggtccaagcgtcaatccggacgacaagcgcctc
gccgtgcggaccgaggaccacccgctcgattacgcacggttcgaaggcacgatccccaaa
ggcgaatatggcggcgggacggtcatgctctgggacaacggcacttggggatcgatcccc
ggcaaggatccccggaagacgctgcccgaaggtcacttgcatttcatcctgcacggccgc
cgcatgcagggcgaatggatcctgttccgcctgaagcctcggggaaaggagaagggggaa
aattggatcctgcgcaaggtgcatgatgctttcgccggcggctcggacgatctggtcggc
atccatttgaccagcgtcgataccgggcgcaccatggacgagatcgccgccggcaaagcc
gtccgcaggcggaagggtgcaaagcctgccgccgcgccgtccctgtcggctgggaagcgt
agaaaggcggccagtgcgttgccaccatttcaaccggtgcagctcgcggcgctagtcgat
catgtgccgtccggcgaccggtggatccatgaactcaaatatgatggctatcggaccctg
ctggcgatgggcggcggggaggggagggcctatacgcgttcgggcctcgactggtcggat
cgtttcgctgggctgataggtgacaccctcaccctagacgcggcaagcgcgctgattgat
ggcgaagctgtcgtgatccttcccgacgggcgcaccagctttcaggccctgcaggcagcg
ttcaaaggcgatcccggtaaaatcgactatgtcgccttcgacctgctcgaactcgacggg
gaggatctgacgcagcgacccctgcttgaacgcaagcagatgctcgcggcgttgatcggt
gagggcaggggccatctccgctactccgatcatatcgtcggacgcggcgaggagctgttg
aaaagcttctgtagcgcggggctcgagggcgtcatctccaagcgggtcgatgcacgctat
tccggctcacggtccggctcctgggtgaagaccaaatgcatccggcgacaagagttcgtg
atcgtgggatggacgccctcggagaagcagcgcggcttccgttcgctgctgctgggcgtc
aacgagaagggcaagctgcgctttgctggcaaggtcggtaccggctttaccggcgacgag
atcgatcgtctgatggatttgatggcgccgctcgaagaaaagaccgcgacggtcgaagcg
ccgcgcgccgccgtacgtggggctcattggatcaagccgaagctggtcgccgaggtcgcc
tatatcgagttcacggacgaaggtgtgttgcgacactcgagttatctgggtttgcgcggg
gacaagaagcccgaggccgtggtgttggagattgaagccccggtggcgacaaccgcagat
cctgccgcaaccagcggcgtcaagatcagcaaccgggatcgcatgatcttccccgagggc
aagcttaccaaaggcgaactggccgactattatgaggcggttgcgcagatcatgctgccc
tgggcaggaagccgaccgatcagcctggtccgctgcccccagggtcgcgacaagaaatgc
ttcttccagaagcatgacgccggcagcttcggcgatgacgtcaagcaggtcggaatattg
gagaaggacgggcatcaggaaccctatctgttcgtcgatacacctgccgggcttctcacc
tgcgtccagatgggcaccatcgagtttcatggatggggcgcacgcatcgaggatgtcgag
aaagccgaccggctggtgttcgacctcgatccggacgagggcctggatttcaaggatgtc
gtctctgccgccttccatctccaggatgtgttagggcagatggggcttgtcacctttccg
atggtcacggggggcaagggcgtgcatgtgatcgcgccgctgacgccgacggcggaatgg
ccgcaggtcaaggacttcgcgcatcgctttgccatggcgctcgcgcaggccgatcccgaa
agattcaccgctgccctcgcaaaggccaagcgcacgggcaagatcttcatcgactatctg
cgcaatcagcgcggcgcgacggccgtcatgccctacagcgcgcgttcccggccttttgcg
ccaatcgcagtgccgctgacgtgggaagaattgcgcgatctcgacggccccaaccattgg
catatcggcgatgcggccgagatgctgaagcgcgtcgcgtcgaaggatctggcgcattgg
ggtcgggccgaccagatcctgccggacctgtga

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