Sphingobium sp. RAC03: BSY17_64
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Entry
BSY17_64 CDS
T04461
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphr
Sphingobium sp. RAC03
Pathway
sphr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BSY17_64 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphr03400
]
BSY17_64 (ligD)
Enzymes [BR:
sphr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BSY17_64 (ligD)
DNA repair and recombination proteins [BR:
sphr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BSY17_64 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AOF95844
UniProt:
A0A1B3MRX3
LinkDB
All DBs
Position
complement(70799..73291)
Genome browser
AA seq
830 aa
AA seq
DB search
MTRTQTKSADESLATYRAKRDFGRTAEPSGAKLPSTGNGFVVQKHAATRLHYDFRLELDG
VLVSWAITRGPSVNPDDKRLAVRTEDHPLDYARFEGTIPKGEYGGGTVMLWDNGTWGSIP
GKDPRKTLPEGHLHFILHGRRMQGEWILFRLKPRGKEKGENWILRKVHDAFAGGSDDLVG
IHLTSVDTGRTMDEIAAGKAVRRRKGAKPAAAPSLSAGKRRKAASALPPFQPVQLAALVD
HVPSGDRWIHELKYDGYRTLLAMGGGEGRAYTRSGLDWSDRFAGLIGDTLTLDAASALID
GEAVVILPDGRTSFQALQAAFKGDPGKIDYVAFDLLELDGEDLTQRPLLERKQMLAALIG
EGRGHLRYSDHIVGRGEELLKSFCSAGLEGVISKRVDARYSGSRSGSWVKTKCIRRQEFV
IVGWTPSEKQRGFRSLLLGVNEKGKLRFAGKVGTGFTGDEIDRLMDLMAPLEEKTATVEA
PRAAVRGAHWIKPKLVAEVAYIEFTDEGVLRHSSYLGLRGDKKPEAVVLEIEAPVATTAD
PAATSGVKISNRDRMIFPEGKLTKGELADYYEAVAQIMLPWAGSRPISLVRCPQGRDKKC
FFQKHDAGSFGDDVKQVGILEKDGHQEPYLFVDTPAGLLTCVQMGTIEFHGWGARIEDVE
KADRLVFDLDPDEGLDFKDVVSAAFHLQDVLGQMGLVTFPMVTGGKGVHVIAPLTPTAEW
PQVKDFAHRFAMALAQADPERFTAALAKAKRTGKIFIDYLRNQRGATAVMPYSARSRPFA
PIAVPLTWEELRDLDGPNHWHIGDAAEMLKRVASKDLAHWGRADQILPDL
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggacacagaccaagtcggcagacgagagccttgccacttatcgggccaagcga
gactttgggcggaccgccgagccttcgggtgcgaagcttcccagcaccggcaacggcttc
gtcgtccaaaaacatgcggcgacacgtcttcattatgatttccgccttgagttagatggc
gtgctcgtcagctgggccatcacacgcggtccaagcgtcaatccggacgacaagcgcctc
gccgtgcggaccgaggaccacccgctcgattacgcacggttcgaaggcacgatccccaaa
ggcgaatatggcggcgggacggtcatgctctgggacaacggcacttggggatcgatcccc
ggcaaggatccccggaagacgctgcccgaaggtcacttgcatttcatcctgcacggccgc
cgcatgcagggcgaatggatcctgttccgcctgaagcctcggggaaaggagaagggggaa
aattggatcctgcgcaaggtgcatgatgctttcgccggcggctcggacgatctggtcggc
atccatttgaccagcgtcgataccgggcgcaccatggacgagatcgccgccggcaaagcc
gtccgcaggcggaagggtgcaaagcctgccgccgcgccgtccctgtcggctgggaagcgt
agaaaggcggccagtgcgttgccaccatttcaaccggtgcagctcgcggcgctagtcgat
catgtgccgtccggcgaccggtggatccatgaactcaaatatgatggctatcggaccctg
ctggcgatgggcggcggggaggggagggcctatacgcgttcgggcctcgactggtcggat
cgtttcgctgggctgataggtgacaccctcaccctagacgcggcaagcgcgctgattgat
ggcgaagctgtcgtgatccttcccgacgggcgcaccagctttcaggccctgcaggcagcg
ttcaaaggcgatcccggtaaaatcgactatgtcgccttcgacctgctcgaactcgacggg
gaggatctgacgcagcgacccctgcttgaacgcaagcagatgctcgcggcgttgatcggt
gagggcaggggccatctccgctactccgatcatatcgtcggacgcggcgaggagctgttg
aaaagcttctgtagcgcggggctcgagggcgtcatctccaagcgggtcgatgcacgctat
tccggctcacggtccggctcctgggtgaagaccaaatgcatccggcgacaagagttcgtg
atcgtgggatggacgccctcggagaagcagcgcggcttccgttcgctgctgctgggcgtc
aacgagaagggcaagctgcgctttgctggcaaggtcggtaccggctttaccggcgacgag
atcgatcgtctgatggatttgatggcgccgctcgaagaaaagaccgcgacggtcgaagcg
ccgcgcgccgccgtacgtggggctcattggatcaagccgaagctggtcgccgaggtcgcc
tatatcgagttcacggacgaaggtgtgttgcgacactcgagttatctgggtttgcgcggg
gacaagaagcccgaggccgtggtgttggagattgaagccccggtggcgacaaccgcagat
cctgccgcaaccagcggcgtcaagatcagcaaccgggatcgcatgatcttccccgagggc
aagcttaccaaaggcgaactggccgactattatgaggcggttgcgcagatcatgctgccc
tgggcaggaagccgaccgatcagcctggtccgctgcccccagggtcgcgacaagaaatgc
ttcttccagaagcatgacgccggcagcttcggcgatgacgtcaagcaggtcggaatattg
gagaaggacgggcatcaggaaccctatctgttcgtcgatacacctgccgggcttctcacc
tgcgtccagatgggcaccatcgagtttcatggatggggcgcacgcatcgaggatgtcgag
aaagccgaccggctggtgttcgacctcgatccggacgagggcctggatttcaaggatgtc
gtctctgccgccttccatctccaggatgtgttagggcagatggggcttgtcacctttccg
atggtcacggggggcaagggcgtgcatgtgatcgcgccgctgacgccgacggcggaatgg
ccgcaggtcaaggacttcgcgcatcgctttgccatggcgctcgcgcaggccgatcccgaa
agattcaccgctgccctcgcaaaggccaagcgcacgggcaagatcttcatcgactatctg
cgcaatcagcgcggcgcgacggccgtcatgccctacagcgcgcgttcccggccttttgcg
ccaatcgcagtgccgctgacgtgggaagaattgcgcgatctcgacggccccaaccattgg
catatcggcgatgcggccgagatgctgaagcgcgtcgcgtcgaaggatctggcgcattgg
ggtcgggccgaccagatcctgccggacctgtga
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