Sphingosinicella sp. BN140058: ETR14_00425
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Entry
ETR14_00425 CDS
T05826
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphs
Sphingosinicella sp. BN140058
Pathway
sphs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ETR14_00425 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphs03400
]
ETR14_00425 (ligD)
Enzymes [BR:
sphs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ETR14_00425 (ligD)
DNA repair and recombination proteins [BR:
sphs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ETR14_00425 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QAY75164
UniProt:
A0A4P6FGN5
LinkDB
All DBs
Position
100511..103210
Genome browser
AA seq
899 aa
AA seq
DB search
MAKPANPLETYNQKRDFAKTAEPKGTFDKLSWGEGHGFMVQKHDATRLHYDFRLELDGVL
KSWAVPNGPSLDPADKRLAVRTEDHPLSYATFEGIIPKGEYGGGTVMLWDRGIWIPHPGK
DPRKTLEEGHLHFTLDGERMQGEWIMIRMKGRPRDRGENWILKKVTDEHAGGSMALTERF
LTSIKTGRTMQEIAAEAKAKELKSWLKGLEPKKNPPRALLGKGGVGGSAGRGPAESRNRL
QSSRQSKTGGGANGAGAPPQGAEGATSAQSAPPPRRSAARSPSPSKARGGGGQGALPLPA
FREPRKATLADHVPSGSGWIHEMKYDGYRCLLAIAGGKAKVYTRSGLDWSDKFPEIVDAA
ASLEVGSALLDGEIVSLDDKGSSSFSALQQAIGEGGRGLTLFLFDALEIDGEDVSRLPNI
ERKGRLATLVGEGKPPILLYAEHIVGHGEELFRAMCDAGQEGIISKRADASYRSARTKTW
LKIKCIQRQEFVIIGWTPSEAKARGFRSLLLAVNEDGALRYVGKVGTGFSMALIQELLAR
LKRIEVKTAPTAVPRAEALGAHWVKSELVCEIAFAEFTSEGVIRHGSFLGLRGDKKAGEV
VRELPQPIAEPSSDDIKITNPERVIFPDAGVTKQELVDYYRAIGPVMMAWAAQRPLSLVR
CPQGRDKKCFFQKHNTGSFGRHVHQIEIEEKKGQTEDYVYVDDTAGLIACVQMGTIEFHG
WGSPVADIEKPDRLIFDIDPDEGLDFAETKRAARDLHRYLADMGLQSFPLLTGGKGVHVV
VPLTPDAEWPEVKDFAQRFCIALATAEPERFTANLAKAKRKGRMFLDYLRNQRGATAIMP
YSARAREGAPVSAPISWDELDDMQSGARFSVRDSALLLERASSRALQGWGEASQTLPDL
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaacccgccaaccccctcgaaacttacaaccagaagcgcgacttcgcgaagact
gcggaaccgaagggcactttcgacaaactctcctggggcgagggccatggcttcatggtc
cagaagcacgacgccacccgcctccattacgatttccggctcgagctcgacggcgtgctg
aagagctgggcggtgcccaacggtcccagcctcgatccggccgacaagcgcctggccgtc
cgcaccgaagaccatcccctctcctacgccaccttcgaggggatcatccccaagggcgaa
tatggcggcggcacggtgatgctgtgggatcgcggcatctggatcccccatcccggcaag
gatccgcgcaagaccctggaggaaggccatctccatttcaccctcgacggcgagcggatg
cagggcgagtggatcatgatccgcatgaagggccgcccgcgcgaccgcggcgagaactgg
atcctgaagaaggtcaccgacgaacatgccggcggctcgatggccctcaccgaacgcttt
ctcaccagcatcaagaccggccgcacgatgcaggaaatcgcggcggaggcaaaggcgaag
gagctgaagagctggctcaaggggcttgagccgaagaaaaatcctccccgagctctgctc
gggaaggggggtgtaggcgggtcggcaggccgggggcctgccgagagccggaaccggctg
caaagcagccgtcagtcgaagactggtggaggggcaaacggcgccggcgccccaccgcag
ggtgcagaaggggccactagcgcccagtctgcccctccaccccgccgctccgcggcacgg
tccccctccccgagcaaagctcgaggaggaggcgggcaaggcgcccttcccctccccgcc
ttccgcgagccgcgaaaggcgacgctcgccgatcacgtcccctccggatccggctggatc
cacgagatgaaatatgacggctatcgctgcctgctggcgatcgccggcggcaaagcgaaa
gtctacacccgctccgggctcgactggtcggacaagttcccggagatcgtcgacgccgcg
gcatcgctggaggtcggctccgccttgctcgatggcgagatcgtcagcctcgacgacaag
ggctcgtcgagcttctcggcgctccagcaggcgatcggcgaaggcggccgcggtctcacc
ctgttcctgttcgatgcgctcgagatcgacggcgaggacgtgtcgcgccttcccaatatc
gaacgcaagggccgcctcgccaccctggtcggcgaaggcaagccgccgatcctgctctat
gccgagcatatcgtcggccatggcgaagagctgttccgggcgatgtgcgacgccggccag
gaagggatcatctccaagcgtgccgacgcctcctatcgttcggcgcggaccaagacctgg
ctcaagatcaagtgcatccagcgccaggaattcgtcatcatcggctggactccgagcgag
gccaaggcgcgcggcttccgctcgctgctgctcgcggtcaacgaagacggggcgttacgc
tatgtcggcaaggtcggcaccggcttctcgatggccttgatccaggaactgctcgccagg
ctgaagcggatcgaggtcaagaccgcgccgaccgccgtcccccgcgcggaggcgctcggc
gcgcattgggtcaagtccgaactggtctgcgagatcgctttcgccgaattcacctcggaa
ggggtgatccgccacggcagcttcctcggcctgcgcggcgacaagaaggccggcgaagtc
gtcagggaactgccgcagccgatcgccgagcccagcagcgacgacatcaagatcaccaat
ccggagcgcgtgatctttcccgacgccggcgtcaccaagcaggaactggtcgattattac
cgcgcaataggcccggtgatgatggcctgggcggcgcagcggccgctcagcctcgtccgc
tgcccgcagggccgcgacaagaaatgctttttccagaagcacaataccggaagcttcggc
cgccacgtccaccagatcgagatcgaggagaagaagggccagaccgaggattatgtctat
gtcgacgatactgccggcctgatcgcctgcgtgcagatgggcacgatcgaattccacggc
tggggctcgccggtggccgatatcgagaagcccgaccggctgatcttcgacatcgatccc
gacgaaggcctcgatttcgccgagaccaagcgcgccgcccgcgatctccaccgctatctc
gccgacatgggtctgcagagcttccccctgctgaccggcggcaagggcgtccacgtggtc
gtgccgctcacgcccgacgcggaatggcccgaggtcaaggatttcgcccagcgtttctgc
atcgccctggcgacggccgagcccgaacgcttcaccgccaatctcgccaaggcgaagcgc
aagggccggatgttcctcgattacctccgcaaccagcgcggcgcgaccgcgatcatgcct
tattcggcgcgcgcccgcgaaggcgcgccggtgtcggcgccgatcagctgggacgaactg
gacgacatgcaaagcggcgcccgtttcagcgtccgcgattccgcactcctgctcgaacgc
gcgtcgagccgcgccctccagggctggggcgaagccagccagactctaccggatctttaa
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