Sphingobium sp. TKS: K426_07785
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Entry
K426_07785 CDS
T04965
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spht
Sphingobium sp. TKS
Pathway
spht03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K426_07785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spht03400
]
K426_07785
Enzymes [BR:
spht01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K426_07785
DNA repair and recombination proteins [BR:
spht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K426_07785
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMK22504
UniProt:
A0A126RKD5
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All DBs
Position
1:1528124..1530613
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AA seq
829 aa
AA seq
DB search
MAEVDPLSTYNRKRDFTRTKEPSGKRGRSHGNSFIVQKHDATRLHYDFRLEMDGVLKSWA
VTRCPSLDPEDKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSVHD
LEKGHLHFILHGQRMRGEWLLIRLKPRGREKGENWLLRKIEDGYAGSAEDLTARELTSIR
SGRTMGEIATDAPAISLKGKKGKAFDAAMKQAVRATPVKPPDKARTRPAPAFQPPQLATL
VDAVPTGNGWMHEIKYDGYRCMLSVAGEKVKIFTRTGLDWTERFAALAGEVAAMDLPAAL
IDGEIVALDSDGNPDFSTLQQMLKGEAKAALHLFAFDLLQLDGQDLTSLPNIARKEKLAA
LLGDGSAHVHVGDHVVGAGERLFQAMCGAGQEGIVSKRADASYRGARTKNWLKVKCTRRQ
EFVIIGWTPSSASGRAIRNLLLGQREGEGLVYAGKVGTGFNAANSEGLIAALRRRGRKTA
ALAVPRSESRGAQWVRPDLVAEIAFAEFTAENIVRHASFLGLREDKAASDVQREKAMPTP
ETRSDVTISHPDRLIFPEAKVTKGELADYYAAMGAAMLPWIAHRPISLVRCPQGRAKKCF
FQKHDSGSFGDHVKHVAIREKAGNEEDYLYVEDSDGLLACVQMGAIEFHGWGSSVADVER
PDRMIFDLDPDEGLDFGDVKKAARDIRRALEDLGLTSFAMLSGGKGIHVVVPLTPQAKWP
QVKDFADRFARALAASEADRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRAREKAS
VAAPVSWEELDDIDSAAHFTVKDAAILLERASSRDLRGWGEAHQPLPAH
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggtcgacccgctcagcacctataaccgcaagcgcgatttcacccgcacgaag
gagccgtcgggcaagcgcggccgcagccacggcaacagcttcatcgtgcagaagcatgac
gcgacccgcctgcattacgactttcgcctggaaatggatggagtcctcaagagttgggca
gtgactcgctgtcccagcctcgatccggaagacaagcgcctcgccgtccgcacggaggat
catccgctgtcctatgcgacgttcgaaggcacgattcccaagggcgaatatggcggcggc
accgtgatgctctgggacgaagggacgtgggaacccgtccccggcaagagcgtgcatgat
ctggagaagggccatctccacttcatcctgcatgggcagaggatgcgcggcgaatggctg
ctgatccggctgaaaccccgcggcagggagaaaggggagaattggctgctgcgcaagatc
gaggatggctatgccggcagcgcggaagacctgaccgcccgcgaactgacgagcatcagg
agcggccggaccatgggcgaaatcgcgaccgacgcgccggccatatccctgaagggcaag
aagggaaaagcctttgacgcggcgatgaaacaagccgttcgcgcaaccccggtcaagccg
ccagacaaggccaggacgcgccccgcgcccgctttccagccgccgcaactcgcgacgttg
gtcgatgccgttcccactggcaatggctggatgcatgagatcaaatatgacggctatcgc
tgcatgctctccgtggcgggggagaaggtcaagatcttcacccgcacaggtctcgactgg
acggagcgtttcgcggctcttgcgggcgaagtcgcggccatggatcttcccgctgcattg
atcgacggggagatcgtcgcgctcgacagcgacggaaacccggacttctctacccttcag
cagatgttgaagggggaggccaaggcggcgctccaccttttcgccttcgacctgctccag
ctcgacggacaggatttgacctcgctgcccaatatcgcgcgcaaggaaaagctggccgct
ttgctgggggacggctcggcgcatgtccatgtcggagatcatgtcgtcggcgcaggggaa
aggctgttccaggccatgtgcggggcagggcaggaggggatagtctccaagcgcgccgac
gcttcctatcgcggcgcccgcacgaagaactggctcaaggtcaaatgcacccgccgccag
gaattcgtcatcatcggctggacgcccagcagcgccagcgggcgcgccatccgcaacttg
ctgctcgggcagcgggaaggggaaggactggtctatgcgggcaaggtcggcacgggcttc
aacgccgccaatagcgaagggctgatcgctgccctgcgcaggcgggggcgcaagaccgcc
gcgctggctgtgccccgcagcgaaagccgtggcgcgcaatgggtccgccccgatctggtc
gctgaaatcgcctttgccgagttcacggcggagaatatcgtccgccatgccagcttcctc
ggcttgcgcgaggacaaggcggccagcgatgttcaacgcgagaaagccatgccgacgccc
gaaacccgcagtgatgtcacgatcagccatcccgaccgcctgatctttccggaggcgaag
gtcaccaagggcgagcttgccgactattatgccgccatgggtgcggcaatgctgccctgg
atcgcgcaccgtccgatcagcctggtccgctgtccgcaggggcgggcgaagaaatgcttc
ttccagaaacatgacagcggcagtttcggtgatcatgtgaagcatgtcgcgatccgcgag
aaagcggggaatgaggaagattatctctatgtagaagatagcgacggacttcttgcctgc
gttcagatgggggcgatcgaatttcacggctggggttccagcgtcgcggatgtcgagcgg
cccgaccgcatgatcttcgatctcgatccggatgaagggctggatttcggggatgtcaaa
aaggccgctcgcgatatccggcgggcactggaggatttggggctcaccagctttgccatg
ctctcgggcggcaagggcattcatgtcgtcgtgccgctgacgccgcaggcgaaatggccg
caggtcaaggattttgccgaccgttttgcccgcgcgctggccgcttcggaagcggatcgc
ttcacggcgaccatgagcaaggcgaagcgcaaaggccgcatcttcatcgactggctgcgc
aaccagcgcggcgcgacggccgtgctgccctatgttgtgcgagcccgcgaaaaggcctcc
gtcgccgcgccggtcagttgggaggagttggacgatatcgacagcgccgcgcatttcacg
gtgaaggatgccgccatattgctggagcgggcctcttcgcgcgaccttcgcggctggggt
gaagcgcatcagcccctgccagcgcattag
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