KEGG   Sphingobium sp. TKS: K426_07785Help
Entry
K426_07785        CDS       T04965                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
spht  Sphingobium sp. TKS
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spht00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    K426_07785
Enzymes [BR:spht01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     K426_07785
DNA repair and recombination proteins [BR:spht03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     K426_07785
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1:1528124..1530613
Genome map
AA seq 829 aa AA seqDB search
MAEVDPLSTYNRKRDFTRTKEPSGKRGRSHGNSFIVQKHDATRLHYDFRLEMDGVLKSWA
VTRCPSLDPEDKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSVHD
LEKGHLHFILHGQRMRGEWLLIRLKPRGREKGENWLLRKIEDGYAGSAEDLTARELTSIR
SGRTMGEIATDAPAISLKGKKGKAFDAAMKQAVRATPVKPPDKARTRPAPAFQPPQLATL
VDAVPTGNGWMHEIKYDGYRCMLSVAGEKVKIFTRTGLDWTERFAALAGEVAAMDLPAAL
IDGEIVALDSDGNPDFSTLQQMLKGEAKAALHLFAFDLLQLDGQDLTSLPNIARKEKLAA
LLGDGSAHVHVGDHVVGAGERLFQAMCGAGQEGIVSKRADASYRGARTKNWLKVKCTRRQ
EFVIIGWTPSSASGRAIRNLLLGQREGEGLVYAGKVGTGFNAANSEGLIAALRRRGRKTA
ALAVPRSESRGAQWVRPDLVAEIAFAEFTAENIVRHASFLGLREDKAASDVQREKAMPTP
ETRSDVTISHPDRLIFPEAKVTKGELADYYAAMGAAMLPWIAHRPISLVRCPQGRAKKCF
FQKHDSGSFGDHVKHVAIREKAGNEEDYLYVEDSDGLLACVQMGAIEFHGWGSSVADVER
PDRMIFDLDPDEGLDFGDVKKAARDIRRALEDLGLTSFAMLSGGKGIHVVVPLTPQAKWP
QVKDFADRFARALAASEADRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRAREKAS
VAAPVSWEELDDIDSAAHFTVKDAAILLERASSRDLRGWGEAHQPLPAH
NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt
atggctgaggtcgacccgctcagcacctataaccgcaagcgcgatttcacccgcacgaag
gagccgtcgggcaagcgcggccgcagccacggcaacagcttcatcgtgcagaagcatgac
gcgacccgcctgcattacgactttcgcctggaaatggatggagtcctcaagagttgggca
gtgactcgctgtcccagcctcgatccggaagacaagcgcctcgccgtccgcacggaggat
catccgctgtcctatgcgacgttcgaaggcacgattcccaagggcgaatatggcggcggc
accgtgatgctctgggacgaagggacgtgggaacccgtccccggcaagagcgtgcatgat
ctggagaagggccatctccacttcatcctgcatgggcagaggatgcgcggcgaatggctg
ctgatccggctgaaaccccgcggcagggagaaaggggagaattggctgctgcgcaagatc
gaggatggctatgccggcagcgcggaagacctgaccgcccgcgaactgacgagcatcagg
agcggccggaccatgggcgaaatcgcgaccgacgcgccggccatatccctgaagggcaag
aagggaaaagcctttgacgcggcgatgaaacaagccgttcgcgcaaccccggtcaagccg
ccagacaaggccaggacgcgccccgcgcccgctttccagccgccgcaactcgcgacgttg
gtcgatgccgttcccactggcaatggctggatgcatgagatcaaatatgacggctatcgc
tgcatgctctccgtggcgggggagaaggtcaagatcttcacccgcacaggtctcgactgg
acggagcgtttcgcggctcttgcgggcgaagtcgcggccatggatcttcccgctgcattg
atcgacggggagatcgtcgcgctcgacagcgacggaaacccggacttctctacccttcag
cagatgttgaagggggaggccaaggcggcgctccaccttttcgccttcgacctgctccag
ctcgacggacaggatttgacctcgctgcccaatatcgcgcgcaaggaaaagctggccgct
ttgctgggggacggctcggcgcatgtccatgtcggagatcatgtcgtcggcgcaggggaa
aggctgttccaggccatgtgcggggcagggcaggaggggatagtctccaagcgcgccgac
gcttcctatcgcggcgcccgcacgaagaactggctcaaggtcaaatgcacccgccgccag
gaattcgtcatcatcggctggacgcccagcagcgccagcgggcgcgccatccgcaacttg
ctgctcgggcagcgggaaggggaaggactggtctatgcgggcaaggtcggcacgggcttc
aacgccgccaatagcgaagggctgatcgctgccctgcgcaggcgggggcgcaagaccgcc
gcgctggctgtgccccgcagcgaaagccgtggcgcgcaatgggtccgccccgatctggtc
gctgaaatcgcctttgccgagttcacggcggagaatatcgtccgccatgccagcttcctc
ggcttgcgcgaggacaaggcggccagcgatgttcaacgcgagaaagccatgccgacgccc
gaaacccgcagtgatgtcacgatcagccatcccgaccgcctgatctttccggaggcgaag
gtcaccaagggcgagcttgccgactattatgccgccatgggtgcggcaatgctgccctgg
atcgcgcaccgtccgatcagcctggtccgctgtccgcaggggcgggcgaagaaatgcttc
ttccagaaacatgacagcggcagtttcggtgatcatgtgaagcatgtcgcgatccgcgag
aaagcggggaatgaggaagattatctctatgtagaagatagcgacggacttcttgcctgc
gttcagatgggggcgatcgaatttcacggctggggttccagcgtcgcggatgtcgagcgg
cccgaccgcatgatcttcgatctcgatccggatgaagggctggatttcggggatgtcaaa
aaggccgctcgcgatatccggcgggcactggaggatttggggctcaccagctttgccatg
ctctcgggcggcaagggcattcatgtcgtcgtgccgctgacgccgcaggcgaaatggccg
caggtcaaggattttgccgaccgttttgcccgcgcgctggccgcttcggaagcggatcgc
ttcacggcgaccatgagcaaggcgaagcgcaaaggccgcatcttcatcgactggctgcgc
aaccagcgcggcgcgacggccgtgctgccctatgttgtgcgagcccgcgaaaaggcctcc
gtcgccgcgccggtcagttgggaggagttggacgatatcgacagcgccgcgcatttcacg
gtgaaggatgccgccatattgctggagcgggcctcttcgcgcgaccttcgcggctggggt
gaagcgcatcagcccctgccagcgcattag

DBGET integrated database retrieval system