Sphingopyxis sp. PAMC25046: E5675_06565
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Entry
E5675_06565 CDS
T06315
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
sphx
Sphingopyxis sp. PAMC25046
Pathway
sphx00470
D-Amino acid metabolism
sphx00550
Peptidoglycan biosynthesis
sphx01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sphx00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
E5675_06565 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
E5675_06565 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sphx01011
]
E5675_06565 (murD)
Enzymes [BR:
sphx01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
E5675_06565 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
sphx01011
]
Precursor biosynthesis
Amino acid ligase
E5675_06565 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
ADH_zinc_N
Motif
Other DBs
NCBI-ProteinID:
QCB54126
UniProt:
A0A4P7RT20
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All DBs
Position
1401281..1402585
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AA seq
434 aa
AA seq
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MITSRAFAGRRYAVLGLARSGLATVEALVASGAGVTAWDEREDARDEAMALGADIGNPLE
IDLVGFAGVVVSPGVPLNRHPIAAHAREAHVPVIGDIELFAEAEGDLPPHKLVGITGTNG
KSTVTALVTHMLESAGVPVLMGGNIGLPILSREPLTEGGVYVLELSSYQIDLAHSLACDI
AVLTNLSPDHLDRYDGFAGYAASKARLFSLQHRDQVAIVAVDDDPSKMIAGRINHRLHRV
SGKDIDPVDQMRWPALQGPHNAQNAVCAIAVCRVLGLDDEQIERGLATYTSLPHRMELVG
EADGVRWFNDSKATNAASAAPALAAFPPAPDQRLHWIAGGQAKGDGLAACRPWFGHVKRA
YLIGEAMEPFAAEIGDAVPVERSGDLAAAVKQAAAAAQPGDIVLLSPACASFDQFKDYEQ
RGDAFRAAVQALGA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
gtgatcacctcgcgcgcctttgccggtcgccgctatgcggtgctggggctggcgcgctcg
ggcctcgcgacagtcgaggcgctcgtcgccagcggcgccggcgtcaccgcctgggacgag
cgcgaggacgcgcgcgacgaggcgatggcgctaggcgccgatatcggcaacccgctcgaa
atcgacctcgtcggtttcgcgggcgttgtcgtctcgcctggcgtgccgctcaatcgccac
cccatcgcagcgcacgcgcgcgaagcgcatgtccccgtcatcggcgacatcgaactcttt
gccgaagccgagggcgacctgccaccgcacaagctcgtcggcatcaccggcaccaacggc
aagtcgaccgtaaccgcgctcgtcacccacatgctcgaaagcgcgggcgtgccggtgctg
atgggcggcaatatcggtctgccgatcctcagccgcgagcccttaaccgaaggcggggtc
tacgtcctcgaactgtcgagctaccagatcgatctcgcgcacagtctcgcgtgcgatatc
gcggtgctgaccaacctaagtcccgatcacctcgaccgctacgacggtttcgcgggctat
gccgcatcgaaggcccgcctgttcagcctccagcaccgcgatcaggtcgcaatcgtcgcg
gtcgacgacgatccttcgaagatgatcgcggggcgcatcaaccaccgtctccaccgcgtg
tcgggcaaggatatcgaccccgtagaccagatgcgctggcccgcgctgcaggggccgcac
aacgcccagaacgccgtctgcgcgatcgcggtgtgccgcgtgttggggctggacgacgag
cagatcgaacgcggcctcgcgacctacacgtcgctgccgcatcgcatggaattggtcggc
gaagccgatggtgtgcgctggttcaacgacagcaaggccaccaacgcggcttccgctgca
ccggcgctggcggcgttcccgccggcgccggaccagcgtttgcactggatcgccggcgga
caggcaaagggcgacgggctcgcggcgtgccgtccctggttcggccacgtcaagcgcgcc
tatctgatcggcgaggcgatggagccgttcgcggccgagattggcgacgcggtcccggtc
gagcggtcgggcgacctggcggcggcggtgaagcaggcggcggcggcggcgcagcccggc
gacatcgtcctgctgtcgcccgcctgcgcctccttcgaccagttcaaggattatgaacag
cgcggcgatgcgttccgcgccgccgtacaggcgctcggggcatga
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