KEGG   Sphingomonas piscis: G7077_04930
Entry
G7077_04930       CDS       T07460                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
spii  Sphingomonas piscis
Pathway
spii03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spii00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    G7077_04930 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spii03400]
    G7077_04930 (ligD)
Enzymes [BR:spii01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     G7077_04930 (ligD)
DNA repair and recombination proteins [BR:spii03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     G7077_04930 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase DNA_ligase_OB_2 DNA_ligase_C
Other DBs
NCBI-ProteinID: QIK78344
UniProt: A0A6G7YNN3
LinkDB
Position
complement(1001099..1003576)
AA seq 825 aa
MARKLDIETYNAKRDFTKTKEPKGRTAKAKGNSFVVQKHDASRLHWDFRLEMDGVLKSWA
VPKGPSLDPGQNRLAIRTEDHPLDYGTFEGTIPKGEYGGGTVMLWDRGTWIPEPGKDPRK
TIEEGHLHFRLEGERMHGDWVMFRLKGKPGDKSEPWMLKKVTDEFANPEQGDALVDECVT
SVTTGRSMAEIASGADVWKSNRDGQKGGRAKKKPAVGPPEFRDPQLATLVDEVPSGNEWI
HEYKYDGYRLLIATGEGSATAWTRNGKDWTDKFRSLVRAAAKLPAGCLLDGEAVALGENG
KPDFQLLQSTLKGSDADLAFYAFDLLVDQGEDITALPNLERKERLAALLKGVPAPLIYGD
HVVGKGEALFQAICKEGGEGIISKKASAPYRGTRSRCWLKIKCIQRSEFVIVGWSESEKR
RSFRSLLLAVNEDGKLTYAGKVGTGFNAKSMEELLALMEPLAVAKAAVEVPRAERRGAHW
IEPKLVAEIAYTEFTSDGVLRHPSFIALREDKPAKQVVREKPQKLKSSAKKGEHPTAESF
GIKITNPDRIIYPEGNITKGALADYYAAIDPLIMVDAARRPMTLIRCPQGRSKKCFFQKH
DAGTMGEHVKHVPVKEKDGEVQDYLYFDDVRGLLSCVQMGAIEFHGWGSRIDPLENPDRL
VFDLDPDVGLDFAKVKEAAVRLRALLGDLGLTTFPLLSGGKGIHVVVPLDAIRDWPTVKS
FAERFTRAIAQAEPQMFTANIRKVERKGRIFLDWLRNQRGATAVMPYSARAREGAPVAAP
IAWEELEKYQGGNHFSITDADELLDRASSKVLAGWGQANQALPDL
NT seq 2478 nt   +upstreamnt  +downstreamnt
atggcgcgcaagctcgacatcgaaacctacaacgccaaacgcgacttcaccaagacgaag
gagccaaaaggccgcaccgccaaggcaaagggcaacagcttcgtcgtccagaagcacgac
gcttcgcgcctccactgggacttccggcttgaaatggacggagtcctgaagagctgggcg
gttccgaagggtcccagcctcgacccgggtcagaatcggctggcgattcgcaccgaggac
catccgcttgattacggcacgttcgaggggacgatccccaagggcgaatatggcggcggc
acggtgatgctgtgggatcgcggcacatggattcccgaacccggcaaggacccgcgcaag
accattgaggaaggccacctccacttccggctggagggcgagcggatgcacggcgactgg
gtcatgttccggctgaagggtaagcccggcgacaagtccgaaccgtggatgctgaagaag
gtcacggacgagttcgccaatcccgaacagggagatgccctcgtggatgagtgcgtgacc
agcgtcaccaccggccgcagcatggcggagatcgccagcggtgccgacgtgtggaagtcc
aaccgcgacggccagaagggcggccgcgcgaagaagaagccggccgtgggcccgcccgag
ttccgcgacccacagctcgcgactctggtcgatgaggtgccgagcggcaatgagtggatc
catgaatataaatatgacggctatcgcctgctgatcgcgactggcgagggttccgccacg
gcatggacccgcaacggcaaggactggacggacaagtttcgctcgttggtccgcgccgcc
gccaagcttccggccggctgcctgcttgacggcgaggcggtcgcacttggggagaatggc
aagccggacttccaattgctgcaatcgacgctgaagggcagcgatgccgaccttgctttc
tacgccttcgacctgctggtcgatcagggcgaggacatcaccgcgctcccgaaccttgaa
cgcaaggagcggctcgcggcgttgctcaagggcgtgccggcgcccctcatctacggcgac
catgtcgtcggcaagggcgaggcgctgttccaggcaatctgcaaggaaggcggcgagggg
atcatctccaagaaggccagcgccccctaccgcggcacccgcagccgctgctggctcaag
atcaagtgtatccagcgctcagagttcgtgatcgtcggctggtcggaaagcgaaaagcgc
cgcagtttccgctcgctgctgctcgccgtcaatgaggacggcaagctgacctatgcgggc
aaggtcggcaccggcttcaacgctaagtcgatggaggaattgcttgcactgatggagccg
cttgccgtcgcgaaggctgccgtcgaggttccccgcgccgagcgcaggggggcgcactgg
atcgaaccgaaactcgtcgctgaaatcgcctacaccgagttcaccagcgacggcgtgctg
cgccacccgagcttcatcgcgcttcgggaggacaagccggccaagcaggtcgttcgcgag
aagccgcagaagctgaagtcatccgcgaaaaaaggtgagcacccgaccgcggaaagcttc
gggatcaagatcaccaacccggaccggatcatctatcccgaaggtaatatcaccaagggc
gcactcgccgattattatgccgcgatcgatccgctgatcatggtcgatgcggcgcggcgg
ccgatgaccctgatccgctgtccgcaaggccgctccaagaaatgctttttccagaagcac
gacgccggaacgatgggtgagcacgtcaagcatgtgccggtgaaggagaaggacggagag
gttcaggactatctctacttcgacgatgttcgcgggctgctgtcctgcgtgcagatgggc
gcgatcgagttccatggatggggcagccggatcgacccgctcgagaaccccgaccggctg
gtgttcgacctcgatccggacgtcgggctcgacttcgccaaggtgaaggaagcggcggtt
cggctccgtgcgttgctcggcgatcttggcctcaccaccttcccgctcctgtccggcggc
aaggggatacatgtcgtggtgccgctcgacgctatacgcgactggcccacggtaaagagc
ttcgccgaacgtttcacccgcgccatcgcacaggccgagccgcagatgttcaccgccaac
atccgcaaggtcgagcgcaagggccgcatcttcctcgactggctccgcaatcagcgcggc
gcgacagcggtgatgccctattcggcccgtgcccgcgaaggggctccggtggcagcgccc
atcgcgtgggaagagttggagaagtaccaaggcggcaaccacttcagcatcaccgatgcc
gacgaacttctcgaccgcgcctcctcgaaagtgctggcaggctggggccaggcgaaccag
gcccttcccgatctttag

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