Sphingomonas piscis: G7077_04930
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Entry
G7077_04930 CDS
T07460
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spii
Sphingomonas piscis
Pathway
spii03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G7077_04930 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spii03400
]
G7077_04930 (ligD)
Enzymes [BR:
spii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G7077_04930 (ligD)
DNA repair and recombination proteins [BR:
spii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G7077_04930 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QIK78344
UniProt:
A0A6G7YNN3
LinkDB
All DBs
Position
complement(1001099..1003576)
Genome browser
AA seq
825 aa
AA seq
DB search
MARKLDIETYNAKRDFTKTKEPKGRTAKAKGNSFVVQKHDASRLHWDFRLEMDGVLKSWA
VPKGPSLDPGQNRLAIRTEDHPLDYGTFEGTIPKGEYGGGTVMLWDRGTWIPEPGKDPRK
TIEEGHLHFRLEGERMHGDWVMFRLKGKPGDKSEPWMLKKVTDEFANPEQGDALVDECVT
SVTTGRSMAEIASGADVWKSNRDGQKGGRAKKKPAVGPPEFRDPQLATLVDEVPSGNEWI
HEYKYDGYRLLIATGEGSATAWTRNGKDWTDKFRSLVRAAAKLPAGCLLDGEAVALGENG
KPDFQLLQSTLKGSDADLAFYAFDLLVDQGEDITALPNLERKERLAALLKGVPAPLIYGD
HVVGKGEALFQAICKEGGEGIISKKASAPYRGTRSRCWLKIKCIQRSEFVIVGWSESEKR
RSFRSLLLAVNEDGKLTYAGKVGTGFNAKSMEELLALMEPLAVAKAAVEVPRAERRGAHW
IEPKLVAEIAYTEFTSDGVLRHPSFIALREDKPAKQVVREKPQKLKSSAKKGEHPTAESF
GIKITNPDRIIYPEGNITKGALADYYAAIDPLIMVDAARRPMTLIRCPQGRSKKCFFQKH
DAGTMGEHVKHVPVKEKDGEVQDYLYFDDVRGLLSCVQMGAIEFHGWGSRIDPLENPDRL
VFDLDPDVGLDFAKVKEAAVRLRALLGDLGLTTFPLLSGGKGIHVVVPLDAIRDWPTVKS
FAERFTRAIAQAEPQMFTANIRKVERKGRIFLDWLRNQRGATAVMPYSARAREGAPVAAP
IAWEELEKYQGGNHFSITDADELLDRASSKVLAGWGQANQALPDL
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcaagctcgacatcgaaacctacaacgccaaacgcgacttcaccaagacgaag
gagccaaaaggccgcaccgccaaggcaaagggcaacagcttcgtcgtccagaagcacgac
gcttcgcgcctccactgggacttccggcttgaaatggacggagtcctgaagagctgggcg
gttccgaagggtcccagcctcgacccgggtcagaatcggctggcgattcgcaccgaggac
catccgcttgattacggcacgttcgaggggacgatccccaagggcgaatatggcggcggc
acggtgatgctgtgggatcgcggcacatggattcccgaacccggcaaggacccgcgcaag
accattgaggaaggccacctccacttccggctggagggcgagcggatgcacggcgactgg
gtcatgttccggctgaagggtaagcccggcgacaagtccgaaccgtggatgctgaagaag
gtcacggacgagttcgccaatcccgaacagggagatgccctcgtggatgagtgcgtgacc
agcgtcaccaccggccgcagcatggcggagatcgccagcggtgccgacgtgtggaagtcc
aaccgcgacggccagaagggcggccgcgcgaagaagaagccggccgtgggcccgcccgag
ttccgcgacccacagctcgcgactctggtcgatgaggtgccgagcggcaatgagtggatc
catgaatataaatatgacggctatcgcctgctgatcgcgactggcgagggttccgccacg
gcatggacccgcaacggcaaggactggacggacaagtttcgctcgttggtccgcgccgcc
gccaagcttccggccggctgcctgcttgacggcgaggcggtcgcacttggggagaatggc
aagccggacttccaattgctgcaatcgacgctgaagggcagcgatgccgaccttgctttc
tacgccttcgacctgctggtcgatcagggcgaggacatcaccgcgctcccgaaccttgaa
cgcaaggagcggctcgcggcgttgctcaagggcgtgccggcgcccctcatctacggcgac
catgtcgtcggcaagggcgaggcgctgttccaggcaatctgcaaggaaggcggcgagggg
atcatctccaagaaggccagcgccccctaccgcggcacccgcagccgctgctggctcaag
atcaagtgtatccagcgctcagagttcgtgatcgtcggctggtcggaaagcgaaaagcgc
cgcagtttccgctcgctgctgctcgccgtcaatgaggacggcaagctgacctatgcgggc
aaggtcggcaccggcttcaacgctaagtcgatggaggaattgcttgcactgatggagccg
cttgccgtcgcgaaggctgccgtcgaggttccccgcgccgagcgcaggggggcgcactgg
atcgaaccgaaactcgtcgctgaaatcgcctacaccgagttcaccagcgacggcgtgctg
cgccacccgagcttcatcgcgcttcgggaggacaagccggccaagcaggtcgttcgcgag
aagccgcagaagctgaagtcatccgcgaaaaaaggtgagcacccgaccgcggaaagcttc
gggatcaagatcaccaacccggaccggatcatctatcccgaaggtaatatcaccaagggc
gcactcgccgattattatgccgcgatcgatccgctgatcatggtcgatgcggcgcggcgg
ccgatgaccctgatccgctgtccgcaaggccgctccaagaaatgctttttccagaagcac
gacgccggaacgatgggtgagcacgtcaagcatgtgccggtgaaggagaaggacggagag
gttcaggactatctctacttcgacgatgttcgcgggctgctgtcctgcgtgcagatgggc
gcgatcgagttccatggatggggcagccggatcgacccgctcgagaaccccgaccggctg
gtgttcgacctcgatccggacgtcgggctcgacttcgccaaggtgaaggaagcggcggtt
cggctccgtgcgttgctcggcgatcttggcctcaccaccttcccgctcctgtccggcggc
aaggggatacatgtcgtggtgccgctcgacgctatacgcgactggcccacggtaaagagc
ttcgccgaacgtttcacccgcgccatcgcacaggccgagccgcagatgttcaccgccaac
atccgcaaggtcgagcgcaagggccgcatcttcctcgactggctccgcaatcagcgcggc
gcgacagcggtgatgccctattcggcccgtgcccgcgaaggggctccggtggcagcgccc
atcgcgtgggaagagttggagaagtaccaaggcggcaaccacttcagcatcaccgatgcc
gacgaacttctcgaccgcgcctcctcgaaagtgctggcaggctggggccaggcgaaccag
gcccttcccgatctttag
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integrated database retrieval system