Spirosoma pollinicola: CWM47_22560
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Entry
CWM47_22560 CDS
T05236
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
spir
Spirosoma pollinicola
Pathway
spir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CWM47_22560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spir03400
]
CWM47_22560
DNA repair and recombination proteins [BR:
spir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CWM47_22560
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CWM47_22560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_16
AAA_22
UB2H
AAA_5
DUF87
AAA_33
Kinesin
DUF2785
Motif
Other DBs
NCBI-ProteinID:
AUD04379
UniProt:
A0A2K8Z3G8
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All DBs
Position
complement(5369981..5372002)
Genome browser
AA seq
673 aa
AA seq
DB search
MDFKLTSEFQPTGDQPKAIEQLVKGINEGEPAQVLLGVTGSGKTFTVANLIAQTNRPTLV
LSHNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAFIATTNTYIEKDLAINEEIDKL
RLAATSALMSGRRDVIVIASVSCIYGMGNPEEFKRNVVNIGVGQNMSRNQFLHQLVSILY
SRTEGEFQRGNFRVKGDTVDLYVAYADFAYRVIFFGDEIETIQRIDPETGKKISNETLVT
IFPANLFVTGRDTLNDAMYQIQDDMVSQVRYFESEFREQEATRIRERTEFDLEMMRELGY
CSGIENYSRYFDKRKPGQRPFCLLDYFPDDYLMVIDESHATIPQIRAMWGGDRSRKTALV
DYGFRLPSAMDNRPLTFQEFEDMCGQSIYVSATPSDYELRKSDGVIVEQLIRPTGLLDPE
IEVRPSLNQIDDLLESIDGRIKNGERVLVTTLTKRMAEELTKYLDRVGIKTRYIHSEVKT
LDRVEILRDLRLGNFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRDIRSLIQTIGRA
ARNVNGKVIMYADRITGSMEKAIDETNRRRAIQLEYNNDNGITPKTVLKSREAIMGQTKV
ADSKAKHFYVEPDEIRIAADPVMRYMGKGDLEKVIQETQSKMERAAKDLDFMEAARLRDE
LFQLRDKLKKETA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggactttaaactaacctctgaatttcaaccaaccggcgatcagcctaaggctatcgaa
cagttggttaagggtataaatgaaggtgaacccgcacaggtattactcggggtcactggg
tcgggtaagacctttacggtcgccaacctcatcgcccaaaccaatcgcccaacgcttgtg
cttagccataacaaaacgctggcagctcagctttacggcgaattcaaacagttcttcccg
gaaaacgcagttgaatatttcatctcttactacgactattaccagcccgaagccttcatt
gctaccaccaatacgtatattgaaaaagacctcgccatcaatgaggaaatcgacaagctg
cggctggctgccacctcggccctcatgagcggtcggcgcgatgttatcgtaatcgcatcg
gtgtcgtgtatttatggcatgggtaaccccgaagaattcaaacgaaatgtggtcaatatt
ggtgtggggcagaacatgagccgcaaccagtttctgcatcagttagtgagcattctgtat
agccgaacagagggcgaatttcagcggggcaattttcgcgtaaaaggcgatactgtagac
ctgtatgttgcttatgccgattttgcgtaccgggttattttcttcggcgacgaaatcgaa
accattcagcgaatcgaccccgaaacgggcaagaaaatatcgaacgaaacactggtgacg
atcttcccagccaacctgttcgtaacgggtcgtgacacgttgaacgacgccatgtatcag
attcaggacgatatggtgtcacaggtccgctattttgaatcggagtttcgggaacaggaa
gcgacccgcattcgcgaacgcacagaatttgacctcgaaatgatgcgcgaactgggctac
tgctccggtattgagaactactcccgctatttcgacaagcgcaaaccgggtcagcggccg
ttctgtctgctcgattattttccggacgattaccttatggtgattgacgagagtcacgct
accattccgcaaatccgggccatgtggggcggtgaccgctcccgcaaaaccgccctcgtc
gactatggtttccgacttccatcggctatggacaaccgcccgcttacgtttcaggagttt
gaagatatgtgcggccagtcaatctatgtatcagctacaccatcagactacgaacttcgg
aaaagcgatggcgttattgtggagcaacttatccggccaacgggcttgcttgatcctgaa
atcgaagtgcgcccgagtttgaaccagatagatgatttactcgaatccatcgacggacgc
atcaaaaacggcgaacgtgtgctggttacaacgcttaccaaacgcatggccgaggaattg
accaagtaccttgaccgggtgggtattaaaacccgctacattcactccgaagtaaaaacc
cttgatcgggtcgaaatcctgcgcgatttacggttgggcaatttcgatgtactggtaggc
gtcaacctgcttcgtgaaggacttgatttgcctgaagtctcgctggtcgccattatggat
gccgataaagaagggttcctgcgtgacatccggtcattaattcaaacaattggccgtgcc
gcccggaacgtgaacggcaaggtgattatgtatgccgaccgaattaccggctcgatggaa
aaagccattgacgaaacaaaccggcgtcgggccattcagttggagtataacaacgacaac
ggcattacaccgaaaacagtattgaaatcgcgcgaagccattatgggtcaaactaaagtg
gccgattcgaaggcaaagcatttctatgtggagccagacgaaatccggattgccgccgat
cccgttatgcgttacatgggtaaaggggatttagaaaaagttattcaggaaacgcaatcg
aaaatggagcgtgcggccaaagaccttgactttatggaagccgcccgccttcgtgacgag
ttgtttcaactacgtgataagctgaagaaggaaacggcgtag
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integrated database retrieval system