Streptomyces platensis: CP981_05385
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Entry
CP981_05385 CDS
T07341
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spla
Streptomyces platensis
Pathway
spla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CP981_05385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spla03400
]
CP981_05385
Enzymes [BR:
spla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CP981_05385
DNA repair and recombination proteins [BR:
spla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CP981_05385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QEV51183
LinkDB
All DBs
Position
complement(1316798..1317730)
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AA seq
310 aa
AA seq
DB search
MNATDSGTGTDTVRAGRRTVRIHRPEKVLFPDDGLTKAEVVGYYRRVAAAMVPQLRGRPL
MLERLPEGLGGPQFMQKDTPGHYPDWIRRAEVTKEGGTVTHTVCDDKATLLFLADQACLT
FHRWLSRAGRPDHPDRLVFDLDPPGPDFEAVREAARQLCGLLGELGLPAALMTTGSKGLH
VIVPLDGKSDFDTVRGFAQDAAEVLAARHPDRLTTAVRKKSRGDRLYLDVQRNAYAQTAV
APWSMRAKPGGPVATPITRQQLDDPQLTAQSWTVRDVEGVLEQMAARPWSGAPARGRSLR
TARRRLDALR
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccacagacagcggcaccggcacggacacggtgcgcgccggccgccgcaccgtg
cggatccaccggccggagaaggtcctgttccccgacgacgggctgaccaaggccgaggtc
gtcggctactaccgccgggtggccgcggcgatggttccgcagctccgggggcggccgctg
atgctggaacggcttccggagggcctcggcggcccgcagttcatgcagaaggacaccccc
ggccactaccccgactggatccgccgggcggaggtcaccaaggagggcggcaccgtcacc
cacaccgtctgcgacgacaaggcgaccctgctgttcctcgccgaccaggcctgtctcacc
ttccaccgctggctgtcccgggccggccggcccgaccaccccgaccggctggtgttcgat
ctcgacccgcccggcccggacttcgaagccgtacgggaggccgcccggcagctctgcgga
ctgctcggtgaactcgggctgccggccgccctgatgaccacggggtccaagggcctgcac
gtcatcgtgccgctggacggcaagagcgacttcgacacggtccgcggcttcgcccaggac
gccgccgaggtgctggcggcgcgtcacccggaccgcctcaccaccgccgtacgcaagaag
tcccgcggcgaccggctctacctcgatgtgcagcgcaacgcctacgcccagacggccgtc
gcgccctggtcgatgcgggcgaaaccgggcgggccggtcgccacgccgatcacccgtcag
cagctcgacgatccccaactcaccgcgcagagctggacggtgagggatgtcgagggtgtg
ctggagcagatggcggcgcggccgtggtccggggcgccggcccgtgggcggtccctgcgt
acggcgcgccggcggctcgacgcactgcggtga
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