Sphingomonas sp. LK11: AV944_16105
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Entry
AV944_16105 CDS
T04954
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AV944_16105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_16105
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AV944_16105
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AV944_16105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
DUF87
AAA_22
AAA_16
AAA
AAA_33
SWI2_SNF2
FAM192A_Fyv6_N
FATC
Motif
Other DBs
NCBI-ProteinID:
APX67104
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Position
3481965..3484157
Genome browser
AA seq
730 aa
AA seq
DB search
MAIQIRTTLDEPETGVSFIPHRPSRPEKAEGGKRFELVTEYTASGDQPAAIQELTAAARA
GDKDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKNFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSINESIDRMRHSATRALLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQSVDQREIIRKLVALQYKRNDAAFMRGNFRVRGDNLEIFPSHYEDS
AWRVSFFGDEIEEIVEFDPLTGKKVASLNSVRIYANSHYVTPGPTMKQAVEAIKFELTER
LKELEIEGKLLERQRLEQRTNFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFEYLP
ENAVLFVDESHVTIGQINGMSRGDHRRKITLAEYGFRLPSAIDNRPLRFNEWDAMRPQTV
SVSATPGNWEMEQTGGVFVEQVIRPTGLIDPPVEIKPVEEQVQDLIIEARKTTELGYRTL
VTTLTKRMAEDLTEYMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGL
DIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERAMLETSR
RREKQMAYNTEHGITPQTIRRQIGDIIAHVASGDQVTVPIDEDRPHMVGHNLRAYIEELE
KKMRKAAADLEFEEAGRLRDEIRQLENEELGLPVHEQKAPIMGRSNEGKPGTRKTRFGKS
KKFASGRKAN
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcgatccagatccgcaccaccctagacgagcccgaaaccggggtcagcttcatcccc
caccgcccgtcgcgtcccgaaaaggcggaaggcggcaagcgcttcgaactcgtcaccgaa
tataccgccagcggcgatcagcccgccgcaatccaggaactgacggcggcggcccgcgcg
ggcgacaaggatcaggtgctgctgggcgtcaccggatcgggcaagaccttcaccatggcc
aaggttatcgaggaattgcagcggcccgcgctcatcctcgcgcccaacaagatcctggcg
gcgcagctgtacggggagttcaagaacttcttccccaacaatgcggtcgaatatttcgtc
agctattacgactattaccagccagaggcctatgtgccccggtccgacacgtacatcgag
aaggaaagctcgatcaacgagtcgatcgaccggatgcgccactccgcgacgcgcgcgctg
ctggagcgcgacgacgtcatcatcgtcgcctcggtatcgtgcctttatggtatcggctcg
gtcgaaacctattcggcgatgatcttcgacctgaaaaagggccagagcgtcgaccagcgc
gagatcatccgcaagctcgtcgcgctccagtacaagcgcaacgacgctgccttcatgcgc
ggcaatttccgagtgcgcggcgacaatctggaaattttcccgtcgcactatgaggactcc
gcctggcgcgtgtccttcttcggcgacgagatcgaggagatcgtcgagttcgatccgctg
accggcaagaaggtcgccagcctcaactcggtgcgcatctacgccaacagccactatgtg
acccctggcccgacgatgaaacaggcggtcgaggcgatcaagttcgagctgaccgagcgg
ctgaaggagttggagatcgagggcaagctgctcgagcgacagcggctggagcagcgcacc
aatttcgacctagagatgatcgcggccaccggcagctgcaacggcatcgagaattacagc
cgcttcctgacgggccgtctccccggcgagccgccgcccacgcttttcgagtatctgccc
gaaaacgccgtgctgttcgtcgacgagagccatgtcaccatcggccagatcaacggcatg
tcgcgcggcgaccatcgtcgcaagatcacgctggccgagtacggcttccgcctgccctcg
gcgatcgacaaccggccgctgcgcttcaacgaatgggacgcgatgcgcccgcagacggtc
agcgtctcggccacgcccggcaattgggagatggagcagaccggcggcgtcttcgtcgaa
caggtcatccgccccacaggcctgatcgacccgccggtcgaaatcaagccggtcgaggag
caggtccaagacctgatcatcgaggcacgcaagacgaccgagcttggctaccgcaccctc
gtcaccacgctgaccaagcgcatggcggaggacctgaccgaatatatgcacgaggcgggg
atcaaggtccgttacatgcactccgacgtcgagacgctggagcgtatcgaactgatccgc
gacctgcggctaggcgtatatgacgtgctgatcggcatcaacctgctgcgcgagggattg
gacattcccgaatgcgggctggtcgcgatcctcgacgccgacaaggaagggtttttgcgc
tccgaaacctcgctgatccagacgatcgggcgggcggcgcgcaatgtcgacggccgcgtg
atcctgtacgccgaccggatcaccggatcgatggaacgcgccatgctggaaacctcgcgg
cgtcgcgagaagcagatggcgtacaacaccgaacacggcatcacgccccagacgatccgc
cgccagatcggcgacatcatcgcgcatgtggcgtcgggcgatcaggtcaccgtgcccatc
gacgaagaccgtccgcacatggtcggccacaatctgcgcgcctatatcgaggaactcgag
aagaagatgcgcaaggctgcggccgacctcgaattcgaggaagcgggccggttgcgggat
gagattcgccaattggagaatgaggaactgggcctgccggtacacgagcagaaggcgccg
atcatggggcgctccaacgagggcaagccgggcacgcgcaagacgcggttcggtaagagc
aagaaattcgccagcgggcggaaggcgaattga
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