KEGG   Sphingomonas sp. LK11: AV944_16105
Entry
AV944_16105       CDS       T04954                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
splk  Sphingomonas sp. LK11
Pathway
splk03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:splk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AV944_16105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:splk03400]
    AV944_16105
DNA repair and recombination proteins [BR:splk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AV944_16105
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AV944_16105
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 UB2H DUF87 AAA_22 AAA_16 AAA AAA_33 SWI2_SNF2 FAM192A_Fyv6_N FATC
Other DBs
NCBI-ProteinID: APX67104
LinkDB
Position
3481965..3484157
AA seq 730 aa
MAIQIRTTLDEPETGVSFIPHRPSRPEKAEGGKRFELVTEYTASGDQPAAIQELTAAARA
GDKDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKNFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSINESIDRMRHSATRALLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQSVDQREIIRKLVALQYKRNDAAFMRGNFRVRGDNLEIFPSHYEDS
AWRVSFFGDEIEEIVEFDPLTGKKVASLNSVRIYANSHYVTPGPTMKQAVEAIKFELTER
LKELEIEGKLLERQRLEQRTNFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFEYLP
ENAVLFVDESHVTIGQINGMSRGDHRRKITLAEYGFRLPSAIDNRPLRFNEWDAMRPQTV
SVSATPGNWEMEQTGGVFVEQVIRPTGLIDPPVEIKPVEEQVQDLIIEARKTTELGYRTL
VTTLTKRMAEDLTEYMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGL
DIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERAMLETSR
RREKQMAYNTEHGITPQTIRRQIGDIIAHVASGDQVTVPIDEDRPHMVGHNLRAYIEELE
KKMRKAAADLEFEEAGRLRDEIRQLENEELGLPVHEQKAPIMGRSNEGKPGTRKTRFGKS
KKFASGRKAN
NT seq 2193 nt   +upstreamnt  +downstreamnt
atggcgatccagatccgcaccaccctagacgagcccgaaaccggggtcagcttcatcccc
caccgcccgtcgcgtcccgaaaaggcggaaggcggcaagcgcttcgaactcgtcaccgaa
tataccgccagcggcgatcagcccgccgcaatccaggaactgacggcggcggcccgcgcg
ggcgacaaggatcaggtgctgctgggcgtcaccggatcgggcaagaccttcaccatggcc
aaggttatcgaggaattgcagcggcccgcgctcatcctcgcgcccaacaagatcctggcg
gcgcagctgtacggggagttcaagaacttcttccccaacaatgcggtcgaatatttcgtc
agctattacgactattaccagccagaggcctatgtgccccggtccgacacgtacatcgag
aaggaaagctcgatcaacgagtcgatcgaccggatgcgccactccgcgacgcgcgcgctg
ctggagcgcgacgacgtcatcatcgtcgcctcggtatcgtgcctttatggtatcggctcg
gtcgaaacctattcggcgatgatcttcgacctgaaaaagggccagagcgtcgaccagcgc
gagatcatccgcaagctcgtcgcgctccagtacaagcgcaacgacgctgccttcatgcgc
ggcaatttccgagtgcgcggcgacaatctggaaattttcccgtcgcactatgaggactcc
gcctggcgcgtgtccttcttcggcgacgagatcgaggagatcgtcgagttcgatccgctg
accggcaagaaggtcgccagcctcaactcggtgcgcatctacgccaacagccactatgtg
acccctggcccgacgatgaaacaggcggtcgaggcgatcaagttcgagctgaccgagcgg
ctgaaggagttggagatcgagggcaagctgctcgagcgacagcggctggagcagcgcacc
aatttcgacctagagatgatcgcggccaccggcagctgcaacggcatcgagaattacagc
cgcttcctgacgggccgtctccccggcgagccgccgcccacgcttttcgagtatctgccc
gaaaacgccgtgctgttcgtcgacgagagccatgtcaccatcggccagatcaacggcatg
tcgcgcggcgaccatcgtcgcaagatcacgctggccgagtacggcttccgcctgccctcg
gcgatcgacaaccggccgctgcgcttcaacgaatgggacgcgatgcgcccgcagacggtc
agcgtctcggccacgcccggcaattgggagatggagcagaccggcggcgtcttcgtcgaa
caggtcatccgccccacaggcctgatcgacccgccggtcgaaatcaagccggtcgaggag
caggtccaagacctgatcatcgaggcacgcaagacgaccgagcttggctaccgcaccctc
gtcaccacgctgaccaagcgcatggcggaggacctgaccgaatatatgcacgaggcgggg
atcaaggtccgttacatgcactccgacgtcgagacgctggagcgtatcgaactgatccgc
gacctgcggctaggcgtatatgacgtgctgatcggcatcaacctgctgcgcgagggattg
gacattcccgaatgcgggctggtcgcgatcctcgacgccgacaaggaagggtttttgcgc
tccgaaacctcgctgatccagacgatcgggcgggcggcgcgcaatgtcgacggccgcgtg
atcctgtacgccgaccggatcaccggatcgatggaacgcgccatgctggaaacctcgcgg
cgtcgcgagaagcagatggcgtacaacaccgaacacggcatcacgccccagacgatccgc
cgccagatcggcgacatcatcgcgcatgtggcgtcgggcgatcaggtcaccgtgcccatc
gacgaagaccgtccgcacatggtcggccacaatctgcgcgcctatatcgaggaactcgag
aagaagatgcgcaaggctgcggccgacctcgaattcgaggaagcgggccggttgcgggat
gagattcgccaattggagaatgaggaactgggcctgccggtacacgagcagaaggcgccg
atcatggggcgctccaacgagggcaagccgggcacgcgcaagacgcggttcggtaagagc
aagaaattcgccagcgggcggaaggcgaattga

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