Sphingomonas sp. LK11: AV944_16395
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Entry
AV944_16395 CDS
T04954
Name
(GenBank) DNA polymerase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AV944_16395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_16395
Enzymes [BR:
splk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
AV944_16395
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AV944_16395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
APX67149
LinkDB
All DBs
Position
3542785..3544182
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AA seq
465 aa
AA seq
DB search
MRIITLPAPDDFDAWRDAARGLIADSVPPDQVVWQVGEQPADLFGAVAEDNPATTAPRFN
VSRGFIDLARSVILSNDPERFALLHTALDRLRRQPRLIEDQADPLIRRLDRLAKAVRRDI
HKMRAFLRFRETEDDDGPRYVAWFEPEHHIVRANAAFFVNRFTTMRWSILTPEVSLHWDG
KTLTEGPGASRADAPEGDPTEAVWKTYYASIFNPARVKIGAMLKEMPRKYWKNMPETALV
SELIAGAQARETGMIATAKTDVRTGRGGNAQAAWAALRDEAMTCTRCPLHAPATQTVFGE
GPVDAALMFVGEQPGDQEDLAGHPFVGPAGQVFDRAVAEAGIDRATAYVTNAVKHFKFEP
RGKRRIHSSPNAGEIQACRWWVEQERLLIQPKVTVALGATAARSLFGKVMTIGRERGKAL
TLPDGGTAFITVHPSYLLRLPDPAAKEVEYARFVEDLKLAAAALS
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcatcataaccctgcccgcccccgacgacttcgacgcttggcgcgacgccgcgcgg
gggttgatcgccgacagcgtgccgcccgatcaggtcgtgtggcaggtcggcgagcagccc
gccgatctgttcggcgcggtcgccgaggacaatccggccaccaccgccccccgcttcaac
gtatcgcgcggctttatcgaccttgcgcgcagcgtcatcctgtccaacgacccggagcgt
ttcgctctgctccacaccgcgctcgaccgattgcgccgccagccccggctgatcgaggat
caggccgatccgctgatccgccgcctcgaccgactggccaaggcggtgcggcgcgacatc
cacaagatgcgcgcctttctgcgctttcgcgagacggaggatgacgatggcccgcgctat
gtcgcctggttcgagcccgagcatcatatcgtgcgtgccaatgcggcgttcttcgtcaac
cgtttcaccacgatgcgctggtcgatcctgacgcccgaggtgtcgctccactgggacggc
aagacgctcaccgaaggtcccggcgcgagcagggcggacgcacccgagggcgatcccacc
gaggcggtgtggaagacctattatgccagcatctttaatcccgcccgcgtgaagatcggc
gcgatgctcaaggagatgccgcgcaaatactggaaaaacatgccggaaaccgcgttggtc
tcggaattgatcgcgggcgcgcaggcgcgggagacgggtatgatcgcaacggccaagacg
gatgtgcggaccggacgcggcggcaatgcgcaggcggcctgggcggcgctcagggacgag
gcgatgacctgcacccgttgcccgctccatgcacccgcgacccagacggtgttcggcgag
ggtccggtcgatgccgcgctgatgttcgtcggcgaacagcccggcgaccaggaggatctg
gcgggccacccctttgtcggcccggccggacaggtgttcgaccgcgcggtggcggaggcc
gggatcgaccgggcgacggcctatgtcaccaacgcggtcaagcatttcaaattcgagccg
cgcggcaagcgccgtatccacagctcacccaatgccggcgaaatccaggcgtgccgctgg
tgggtcgaacaggaacgtctgctgatccagccgaaagtgacggtggccttgggcgcgacg
gcggcgcgatcgctgttcggcaaggtcatgacgatcgggcgtgaacgaggcaaggctctg
acgctgcccgatggcggcacggccttcatcacggtgcatccgagttatctgctccgcctg
cccgatccggcggcgaaggaggtcgaatatgcgcggttcgtagaggatttgaagctggcg
gcggcggcgctatcgtga
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