KEGG   Sphingomonas sp. LM7: BXU08_12640Help
Entry
BXU08_12640       CDS       T04824                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
splm  Sphingomonas sp. LM7
Pathway
splm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:splm00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BXU08_12640
Enzymes [BR:splm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BXU08_12640
DNA repair and recombination proteins [BR:splm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BXU08_12640
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DUF2742
Motif
Other DBs
NCBI-ProteinID: AQR74386
UniProt: A0A1S6FL38
LinkDB All DBs
Position
complement(2742191..2744650)
Genome map
AA seq 819 aa AA seqDB search
MAKPDPLEKYNAKRDFAQTAEPAGEIARTGGNRFMVQKHDATRLHWDFRIEVDGVLKSWA
VTRGPSIDPGEKRLAVRTEDHPLSYADFEGTIPKGQYGGGTVMLWDDGVWEPIEGKSAKD
LEKGHLHFRLQGERMNGEWLLIRLKPRGKERGENWLLRKIDDAYAGATDYLVETGLTSIK
TGRTMQEIAEGKKAGKRPAKASPQATARVAKHAAPPRNAKLPEFEKPQLATLVDSVPTGS
QWLHEVKYDGYRALIATGAKGPKIYTRTGLDWTDKFPGIAAAAKSLPAPALIDGEIVAFK
AGKPDFSTLQEAISAGGEGLSFFAFDLLRDRGEDTAKLPQLTRKERLRALLEGADERIQF
SEHIAGAGETLFEEMCREGFEGIVSKRADAPYRGARTKAWLKVKCIRRQEFVIIGWLPST
AKGRGLRSLLLAVNGADGLVYAGKVGTGFNQATLHDLRERFDKVAAKEAPVKVPRAEARG
AQWLKPSLVAEVAFSEFTAENVVRHGSFLGLREDKKAKDVVVETPAPLPDVPETSIKISS
RDRVIYPEAGLTKGQLADYYAAIAPVALRWLANRPISLVRCPQGRAKHCFFQKHDAGSFG
EQVHHVDVREKDGSVEPYLYIDDLDGIMACVQMGTIEFHGWGSLVADIEKPDRLVFDLDP
DEGLDFAMVKKAAEDLKEHLADIGLTSWPLLSGGKGVHVVVPLIPQAEWPAVRSFAERFA
RALAQAEPDRFTANLKKVTRKGKIFIDYLRNQRGATAVLPYVARARENAPVAAPVTWSEL
RDLDSAKLYTIRDATALLERATSRALQGWGEAEQALPDL
NT seq 2460 nt NT seq  +upstreamnt  +downstreamnt
gtggccaagcccgacccgctcgaaaaatacaatgccaagcgcgacttcgcgcagactgcc
gagcccgcgggcgagatcgcacgcaccggcggcaaccgcttcatggtccagaagcacgac
gccacccggctccactgggacttccgcatcgaagtggacggcgtgctcaagagctgggca
gtcacccgcggcccgagcatcgacccgggcgagaagcgcctcgcggtgcgcacggaggat
catccgctgtcctatgccgatttcgagggcacgatccccaagggccaatatggcggcggc
acggtgatgctgtgggacgatggcgtctgggagccgatcgaaggcaagagcgccaaggat
ctggagaagggccatctccacttccgcctccaaggcgagcggatgaacggcgagtggttg
ctcatccgcctgaagccgcggggcaaggagcggggcgagaattggctgctccggaagatc
gacgatgcctatgccggcgccaccgactatctggtcgagaccgggctcaccagcatcaag
accggccgcacgatgcaggagatcgccgagggcaagaaagcgggcaagcgccccgccaag
gcttcgccgcaagccacggcgcgagtggcaaagcatgccgcgccgcccaggaacgccaag
ctgccggaattcgagaagccgcagctcgctacgctggtcgatagcgtcccgaccggcagc
cagtggctccacgaagtcaaatatgacggctatcgcgcgctgatcgccaccggcgccaag
gggcccaagatctacacccgcaccgggctcgactggaccgacaaattccccggcatcgcc
gcggcggcgaagagcctccccgcccccgcgctgatcgacggcgagatcgtcgcgttcaag
gcgggcaaacccgatttctcgactctgcaggaagccatttccgcgggcggcgagggactg
agtttcttcgcgttcgacttgctgcgcgaccggggcgaagacaccgccaagctcccccag
cttactcgcaaggagcggctccgcgcgctactcgaaggcgccgacgaacgcatccagttc
tccgagcatatcgccggtgccggcgagacgctgttcgaggagatgtgccgcgaggggttc
gaggggatcgtctcgaagcgcgccgatgcgccgtatcgtggcgcgcgcaccaaggcctgg
ctcaaggtcaaatgcataagacgccaggaattcgtgatcatcggctggctccccagcacc
gccaagggccgcggccttcgctcgctgctgctggcggtcaacggtgccgacgggctggtt
tatgccggcaaggtgggaacgggattcaaccaggcgacgctccacgatctgcgcgagcgc
ttcgacaaggtcgcggcgaaggaagcgccggtgaaggtgccccgcgccgaggcgcgcggc
gcgcagtggctcaagccgagcctcgtcgccgaggtcgcgttcagcgagttcaccgccgag
aatgtcgtgcgtcatggcagcttcctcggcttgcgcgaggacaagaaggccaaggacgtc
gtcgtcgaaacgcccgcgccgctccccgacgttcccgaaaccagcatcaagatcagcagc
cgcgatcgagtgatctatcccgaggcggggctgaccaaggggcaactcgccgattattac
gccgcgatcgcgccggtggcgctgcgctggctggccaatcgcccgatcagcctggtccgc
tgcccgcaaggccgcgcgaaacactgtttcttccagaagcacgatgccggcagcttcggc
gagcaggtccaccatgtcgatgtccgcgagaaggacggcagcgtcgagccctatctctat
atcgacgatctcgatgggatcatggcgtgcgtccagatgggtacgatcgagttccacggt
tggggcagcctcgtcgccgatatcgagaaacccgatcgtctggtcttcgatctcgaccct
gacgaggggctcgatttcgcgatggtcaagaaggcggcggaggacctcaaggagcatctc
gccgatatcgggctgaccagctggccgctgctatcgggcggcaagggcgtgcacgtcgtc
gtgccgctgatcccgcaggcggagtggccggcggtgcgcagctttgccgaacgcttcgcc
cgcgcgctggcgcaggccgagcccgaccgcttcaccgccaacctcaaaaaggtgacgcgc
aagggcaagatcttcatcgactatctgcgcaaccagcgtggcgcgactgcggtactgccc
tatgtcgcgagggcccgcgaaaacgcgccggtcgccgcgccggtcacctggagcgagctg
cgcgacctcgactcggccaagctctacacgatccgcgacgccacggcgctgctcgagcgc
gccaccagccgcgcgctgcagggctggggcgaggccgagcaggcgctaccggatttgtga

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