KEGG   Sphingobium sp. MI1205: K663_11060Help
Entry
K663_11060        CDS       T04383                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
spmi  Sphingobium sp. MI1205
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spmi00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    K663_11060
Enzymes [BR:spmi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     K663_11060
DNA repair and recombination proteins [BR:spmi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     K663_11060
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1:complement(2295871..2298363)
Genome map
AA seq 830 aa AA seqDB search
MAQADLLKEYNRKRDFARTKEPAGKRGRTRGNSFIVQKHDATRLHYDFRLELDGVLKSWA
VTRGPSLDPADKRLAVRTEDHPLSYASFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSAND
LAKGHLHFILHGERMKGEWLLIRLKPRAGEGKRENWLLRKIDDVHAGAAEDLVGRELTSI
RSGRTMSEIAADAPAISLKGKRGKAFDDAMAKAQKMTPARATIKGRSGKPPPFQSPQLAT
LVDAVPTGSHWLHEIKYDGYRSLLSVAGSRVKVFTRTGLDWTDRFASLAREVASLRLPPA
LIDGEIVALGPDGNPDFSTLQQVLKGEGKGELHLFAFDLLSLDGEDLAWLPNIARKEKLA
ALLGQGSDHVHFSDHIVGPGEKLFRAMCEAGQEGIISKRADAPYRGGRTRNWLKVKCTRR
QEFVIVGWTPSSASGRSLRNILLAQNGEEGLVYAGKVGTGFNARNSEALLRQLKKLSRKS
PPLTVPRTEARNVQWVRPDLVAEIAFAEFTSDNVVRHGSFLGLREDKQARDVTREQAMTT
PQGDRDVQVSNRDRLIFPEAKVTKGQLADYYEAAGAIMLPWIAHRPISLVRCPQGRAKKC
FFQKHDSGSFGDHVKHVAIREKDGDEQDYLYVDDIDGLIACVQMGTIEFHGWGSRVEDVE
KPDRLIFDLDPDEGLDFEDVKKAARDIRHTLEDIGLVSFAMLSGGKGVHVVVPLTPEAEW
PKVKDFADRFARALASTEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRARENA
PVAAPVSWTELNDIDRAAAFTIADVGQLLDRAGSRELRGWGEARQTLPDF
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atggcccaagccgatcttctgaaggaatataatcgcaaacgggatttcgcccggacgaag
gagcctgccggcaagcggggccgcacccgcggcaacagctttatcgttcaaaagcatgac
gccacgcggctgcattatgattttcgcctcgaactggatggcgtgctgaaaagctgggcg
gtgacgcgcgggccaagccttgatccggccgacaagaggctggcggtccgcacggaggat
catcccctgtcctacgccagcttcgaaggaacgatccctaaaggcgaatatggtggcggc
acggtgatgctgtgggatgagggaacatgggaacctgttcccggcaagagcgccaatgat
ctggccaaggggcatctgcacttcattcttcatggcgaacggatgaagggtgaatggctt
ctcatccgcctgaagccccgcgcgggtgaagggaagcgcgaaaactggctgcttcgcaag
atcgatgacgtccatgctggcgctgccgaggatctggtaggccgcgaactgacgagcatc
aggagtggccggacgatgagcgagatcgctgccgatgcccccgccatttccctgaagggc
aagcgcgggaaagcgttcgacgatgccatggcaaaggcgcaaaagatgacgcccgcgcgc
gctacaatcaaagggcggagcggaaagccgccgccgttccagtccccgcaactggcgacg
ctggtcgatgctgttccgacaggcagccactggttgcacgagatcaaatatgacggctat
cgcagtttgctgagcgttgcgggaagccgcgtaaaggtttttactcgcacgggtctcgat
tggacggaccgctttgcgtcgctcgctcgggaggtggcgagcctgaggttgccgcctgct
ctgatcgacggggagatcgtcgcgctgggaccggatggaaaccccgacttttccaccttg
cagcaggtcctgaagggcgaaggcaagggcgagcttcacttgtttgcttttgaccttcta
tcgctggatggggaggatctggcatggctgcccaatatcgcgcggaaggaaaagctggcg
gcgctgctggggcaaggcagcgaccatgtgcatttttccgaccatattgtcggccccggt
gaaaagctgttccgcgccatgtgcgaggcggggcaggaggggataatatcaaagcgtgcc
gatgctccctatcgtggggggcggaccaggaactggttgaaagtcaaatgcacgcggcgg
caggaattcgtcattgttgggtggacgccaagttccgccagtggccgctcgcttcgcaat
atcctgctcgcgcagaacggcgaggagggtcttgtctacgcagggaaagtaggaaccggc
ttcaacgctcgaaacagtgaggctttgcttcggcagttgaagaagttgagccgcaaatcc
ccgcctttgacggtgccgcgcaccgaagcgcgaaatgtgcagtgggtgcggcctgacctg
gtagccgaaatcgcctttgccgaatttaccagcgacaatgtcgtgcgtcacggcagcttc
cttggcctgcgcgaagacaagcaggcgcgtgacgtcacgagggagcaagcaatgacgaca
ccccaaggtgacagagatgtccaagtgtccaaccgggaccggctgatttttccggaagcg
aaggtgaccaagggtcagcttgccgattattatgaagcggctggcgcgatcatgctgcca
tggattgctcatcgaccgataagccttgttcgctgtccccagggcagggcgaagaaatgc
ttcttccaaaagcatgacagcggaagctttggcgatcatgtgaagcatgtcgccattcgt
gaaaaggacggcgatgaacaggattatctctatgtcgatgatatcgacggccttatcgcc
tgcgttcagatggggacgatcgaattccatggatggggatcgcgggtggaggatgtggag
aagccggaccggttgatctttgatcttgacccggatgagggtttggactttgaagatgtg
aagaaggctgcccgcgacattcgtcatacgttggaggatatcggcctggtcagctttgcc
atgttatcaggcgggaagggcgtgcatgtcgttgtgccgctgaccccggaagcggaatgg
cccaaagtaaaggatttcgcggaccggttcgccagagcgcttgcttcaacagagcctgat
cgcttcaccgcgacgatgagcaaggccaagcgcaaggggcgtatttttatcgactggtta
cgcaaccagcgcggggccaccgccgtgttgccctatgtcgtgcgcgcgcgtgaaaatgcc
ccggtggcggcgcctgtcagttggaccgaactgaatgatatcgatcgcgctgctgccttc
accatagcggatgttggccagttgctcgaccgggctggatcacgggaattgcggggatgg
ggcgaagcgcgccaaacactccccgacttttga

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