Schizosaccharomyces pombe (fission yeast): SPBC36.05c
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Entry
SPBC36.05c CDS
T00076
Symbol
clr6
Name
(RefSeq) class 1 histone deacetylase Clr6
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03082
ATP-dependent chromatin remodeling
spo03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
SPBC36.05c (clr6)
03083 Polycomb repressive complex
SPBC36.05c (clr6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
spo03036
]
SPBC36.05c (clr6)
Enzymes [BR:
spo01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
SPBC36.05c (clr6)
Chromosome and associated proteins [BR:
spo03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
SPBC36.05c (clr6)
HDAC complexes
Sin3A-HDAC complex
SPBC36.05c (clr6)
BRAF-HDAC complex
SPBC36.05c (clr6)
REST complex
SPBC36.05c (clr6)
SHIP complex
SPBC36.05c (clr6)
MiDAC complex
SPBC36.05c (clr6)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
SPBC36.05c (clr6)
Heterochromatin formation proteins
Other heterochromatin formation proteins
SPBC36.05c (clr6)
Chromatin remodeling factors
NuRD complex
SPBC36.05c (clr6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
NIL
DUF1256
Motif
Other DBs
NCBI-GeneID:
2540368
NCBI-ProteinID:
NP_595333
PomBase:
SPBC36.05c
Ensembl:
SPBC36.05c
UniProt:
O59702
Structure
PDB
LinkDB
All DBs
Position
II:complement(849345..851518)
Genome browser
AA seq
405 aa
AA seq
DB search
MGFGKKKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRND
MTRCHTDEYIEFLWRVTPDTMEKFQPHQLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQE
LNSGNAEIAINWAGGLHHAKKREASGFCYVNDIALAALELLKYHQRVLYIDIDVHHGDGV
EEFFYTTDRVMTCSFHKFGEYFPGTGHIKDTGIGTGKNYAVNVPLRDGIDDESYESVFKP
VISHIMQWFRPEAVILQCGTDSLAGDRLGCFNLSMKGHSMCVDFVKSFNLPMICVGGGGY
TVRNVARVWTYETGLLAGEELDENLPYNDYLQYYGPDYKLNVLSNNMENHNTRQYLDSIT
SEIIENLRNLSFAPSVQMHKTPGDFTFENAEKQNIAKEEIMDERV
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgggaagaaaaaggtttcttatttctatgatgaggatgttggaaattatcac
tatggtcctcagcatccaatgaagcctcatcgcgttcgcatggttcataatctggtcgtt
aattacaacttgtatgagaagttgaacgttattacacctgttagagcaacaaggaatgac
atgactcgttgtcataccgatgagtatattgaatttctttggagagttacacctgacacg
atggaaaaatttcaaccgcatcagctgaaatttaacgtcggtgatgattgtcctgttttt
gatgggctgtacgaattttgttcaatttctgctggcggttcaattggtgctgctcaagaa
cttaactcgggaaacgcagaaattgctattaattgggctggaggcctacatcacgctaaa
aaacgtgaagcttctggtttctgctatgttaatgatatcgcgttggctgctttagaattg
ctgaaatatcatcaacgtgttctttacattgatattgatgttcaccacggagacggtgta
gaagaatttttctacactacggatcgcgttatgacttgttcattccacaaattcggtgaa
tattttccaggaaccggtcatatcaaggacaccggaattggaacaggaaaaaactatgct
gttaacgttcctttgagagatggtattgacgatgaatcttatgaaagcgtatttaagcct
gttataagtcacataatgcaatggtttcgaccggaagctgttattttacaatgtggaaca
gattctctcgctggtgatcgactaggctgcttcaatctgtcaatgaagggacattcaatg
tgcgttgattttgttaagagctttaatttgccaatgatatgcgttggaggaggtggatat
actgtacggaatgttgcccgtgtctggacttatgaaactggtcttttagccggcgaagag
cttgatgaaaaccttccttataatgactatttacaatattacggtcccgattacaagctc
aatgttctttcaaacaatatggaaaaccataacactcggcagtatcttgattcgataacc
tctgaaatcatcgaaaatttgagaaacttatcttttgcacctagcgttcaaatgcataaa
actcccggtgactttacgtttgaaaatgccgaaaagcagaacattgcgaaagaagagatt
atggatgagcgcgtatag
DBGET
integrated database retrieval system
