Schizosaccharomyces pombe (fission yeast): SPBC800.03
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Entry
SPBC800.03 CDS
T00076
Symbol
clr3
Name
(RefSeq) class 2 histone deacetylase Clr3
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
spo01009
]
SPBC800.03 (clr3)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
SPBC800.03 (clr3)
04131 Membrane trafficking [BR:
spo04131
]
SPBC800.03 (clr3)
03036 Chromosome and associated proteins [BR:
spo03036
]
SPBC800.03 (clr3)
Enzymes [BR:
spo01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
SPBC800.03 (clr3)
Protein phosphatases and associated proteins [BR:
spo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
SPBC800.03 (clr3)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
SPBC800.03 (clr3)
Membrane trafficking [BR:
spo04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
SPBC800.03 (clr3)
Chromosome and associated proteins [BR:
spo03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
SPBC800.03 (clr3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Arb2
TetR_C_30
Motif
Other DBs
NCBI-GeneID:
2540821
NCBI-ProteinID:
NP_595104
PomBase:
SPBC800.03
UniProt:
P56523
Structure
PDB
LinkDB
All DBs
Position
II:254715..257138
Genome browser
AA seq
687 aa
AA seq
DB search
MLASNSDGASTSVKPSDDAVNTVTPWSILLTNNKPMSGSENTLNNESHEMSQILKKSGLC
YDPRMRFHATLSEVDDHPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEEL
LQVHSQEMYDRVTNTEKMSHEDLANLEKISDSLYYNNESAFCARLACGSAIETCTAVVTG
QVKNAFAVVRPPGHHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNG
TQMAFYDDPNVLYVSLHRYENGRFYPGTNYGCAENCGEGPGLGRTVNIPWSCAGMGDGDY
IYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAAYAHMTQMLMGLADGKVF
ISLEGGYNLDSISTSALAVAQSLLGIPPGRLHTTYACPQAVATINHVTKIQSQYWRCMRP
KHFDANPKDAHVDRLHDVIRTYQAKKLFEDWKITNMPILRDSVSNVFNNQVLCSSNFFQK
DNLLVIVHESPRVLGNGTSETNVLNLNDSLLVDPVSLYVEWAMQQDWGLIDINIPEVVTD
GENAPVDILSEVKELCLYVWDNYVELSISKNIFFIGGGKAVHGLVNLASSRNVSDRVKCM
VNFLGTEPLVGLKTASEEDLPTWYYRHSLVFVSSSNECWKKAKRAKRRYGRLMQSEHTET
SDMMEQHYRAVTQYLLHLLQKARPTSQ
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgctggcctctaattctgatggtgcatctacttctgtaaaaccatccgatgatgctgta
aacacggtaactccatggtctattcttttgacaaacaataaaccaatgtctggaagtgaa
aatacattaaataacgaatcccatgaaatgtcgcaaatcttgaaaaaatctggattatgc
tatgatcctcgaatgagattccatgccactctaagtgaagtggatgaccatcctgaagat
ccaagacgcgtccttcgtgtttttgaagctataaagaaggccggttatgtatctaatgtg
ccgagtccgtcagatgtatttttacggattccggctagagaagctactttagaagagtta
ttacaagttcattcacaggaaatgtatgatagggttactaataccgaaaaaatgtctcat
gaggatttggccaatctcgaaaaaatcagtgattctctatactataataacgaaagtgcg
ttttgtgctcgattggcttgtggtagcgcaattgaaacatgtacggctgtcgtaactggt
caagtaaaaaatgccttcgcagttgttcgccctcctggccatcatgcagaaccccataaa
cctggtggcttttgtttattcaacaatgtttctgtaaccgcaaggagtatgctacaacgc
tttccggataaaataaaaagagtattgattgtcgactgggatatacaccatggaaatggt
acgcaaatggctttttatgacgatccaaatgttctatacgtttctttgcatcgatatgaa
aatggtcgtttctatcctggcaccaattatgggtgtgcagaaaattgtggagagggcccg
ggattgggtagaactgtaaatattccttggagttgtgctggcatgggagatggtgattat
atatacgcttttcagcgcgtcgtaatgcctgttgcttatgaatttgatccagatttagtt
attgtaagttgcggctttgatgctgctgcaggagatcacattggtcaattcttgttaact
ccagctgcctatgctcatatgacacaaatgttaatgggattagcagatgggaaagttttt
atctcccttgagggaggttataatttggattctataagcacatcagccttagctgtagcc
caaagtttgttgggaattcctcctggacgattgcatacaacatatgcatgtccacaggcc
gttgctaccatcaaccatgtaaccaaaatacaatcccaatactggagatgtatgaggccg
aaacacttcgacgcaaatcctaaggatgcccatgtagatcgattacatgatgttattcga
acttatcaagctaaaaaacttttcgaagactggaaaattaccaatatgccaatactaagg
gattccgtttccaatgtattcaacaatcaagtactgtgctctagcaatttctttcaaaaa
gataaccttctcgttattgtccatgaatctcctagagtcctgggtaatggaactagtgaa
acgaacgttttgaatttaaatgattcgcttttagtagatcccgtgagcctttatgttgaa
tgggctatgcaacaggactgggggcttatcgacataaatatacctgaagtggttacggac
ggtgaaaatgcaccggttgacattctttctgaagtgaaagaactttgtctttatgtatgg
gataattatgttgagttgtcgatttcaaaaaatatttttttcatcggtggaggcaaagcg
gtacatggattggttaatttggcatcttccaggaatgtgtcagacagagttaagtgtatg
gtgaatttccttggcactgaacctttggtgggtcttaaaacggcatcagaggaagatctt
ccaacgtggtattatcgtcattcactcgtgtttgtgagttctagtaatgagtgctggaaa
aaggcaaagcgtgctaaaagaagatatggacgacttatgcaaagtgaacatactgaaact
tcggacatgatggagcaacactatcgagcggttactcaatacttgctgcatttgcttcaa
aaggcccgaccaacttctcagtaa
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