Schizosaccharomyces pombe (fission yeast): SPCC1183.05c
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Entry
SPCC1183.05c CDS
T00076
Symbol
lig4
Name
(RefSeq) DNA ligase Lig4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SPCC1183.05c (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spo03400
]
SPCC1183.05c (lig4)
Enzymes [BR:
spo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SPCC1183.05c (lig4)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
SPCC1183.05c (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
DNA_ligase_A_C
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
2539042
NCBI-ProteinID:
NP_587888
PomBase:
SPCC1183.05c
Ensembl:
SPCC1183.05c
UniProt:
O74833
LinkDB
All DBs
Position
III:complement(599420..603753)
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AA seq
913 aa
AA seq
DB search
MDEAKETVFTKPQNHSSTLEFYDFVTTLLEPLSRIGKTRKSKTSNLDPYELKRKILLDYF
NKWRQHVGPDLYPLLRLMLPDLDRERGSYGFKEFGLGKLFIRAMHLSPTSEDAKSLKNWR
GSESKHTGDFSTMLQDILQRRAYRTFPGAFTVGDVNALLDQLADASSEDTRVNILEQFYR
SLSPLELRWLIPILLKVRKYGTSEKFILSVFHPDAARLYRLCSSLKRICWELYDPSRSLD
ETETDVEVFSCFQPQLANFKKKDLHQTLEAMGNKPFWIEEKLDGERIQLHMSSGKFQFYS
RNARSYTYAYGSSYFDEQSRLTQYIIGAFDKRISQIILDGEMVTWDPVLETVIPYGSLRS
IFEDSSSHSSYSPYYVVFDILYLNGKSLVKYSLESRRRILEKVIVRESHRMSILPYKVGS
TIEDIEAELRNVIQEGSEGLVIKKPSGSYHLGERMDDWIKVKPYYLQGFGEDLDCLILGG
YFGRGKQSGKINSFLCGLRMDYTPKDHSEKFQSFVRVGGGFTYFDRDIIRKETEGKWLPW
SSDALEYMELAGTKQDFEKPDMWIHPKDSLVLQIKAAEVVVSNRFKTNYTLRFPRLEKVR
LDRSWKDALTINEFFTLKNAVEKQDNVSFHVNKKRKVSQKREKQKKFLYDEPTFKKEASP
HSDVLKNLHFVVLPPTELHETKAGLQQIIIENGGLIHQGVGNFGKERLFLVADRVSTRVS
IERSKNMCTIIRSQWVMDSVNNQRLMPQWSYLLFSKDEKYSWKTALESLSAKSLSNLLVE
LKQLDLSKEYSKISDDTSILNLTISKEEASFVGAFPFLKFTVFLDLKGIENSELYDVRMG
QYRLTKCILLWNGATIEKDISSKKLTHVVMFVEDSTRLEQLTKACELYQIEPKFVNFEWV
VNEWKKASTNILG
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagccaaagagacggtatttacgaaacctcaaaatcattcaagcacccttgaa
ttctatgattttgttacaacattattggaaccgttatcaagaattggaaagactaggaaa
tccaaaacatcaaaccttgacccttatgaattaaagcgcaaaatcctcttggattacttt
aataaatggcgacaacatgtaggaccagatctttatccattacttcgactaatgcttcct
gatttggatcgtgaaagaggatcatatgggttcaaggaatttgggcttggaaaactgttt
attcgagctatgcatttgagtcctacttctgaagatgcaaaatctttgaaaaattggaga
ggatccgagtccaaacatactggagatttttctaccatgttgcaggatattttacaaaga
agggcatacaggacctttcctggtgcctttacagttggtgatgtcaacgccctgctggat
caattagcagatgcttcttctgaggatacccgagttaatattttggagcaattttataga
tccttgagtcctcttgagcttcgatggctaattcccattttactgaaagttcgaaaatac
ggaacatcggaaaaattcatactttctgtgttccatcctgatgcagctcgattatatcga
ctgtgtagctccttaaagagaatttgttgggagctctatgatcctagtcggtctcttgat
gaaactgaaacagatgtggaagtctttagttgcttccagcctcagctagccaatttcaaa
aaaaaggatctccatcaaacgctggaagccatgggaaataaaccgttttggattgaagaa
aagctagacggggagcgtattcaattacacatgagttcaggaaaattccaattctatagt
cgaaatgccaggtcgtacacttatgcctatggctctagttatttcgatgaacaatctagg
ctgacacaatacatcattggagcatttgacaaacgtatttcacaaattattcttgatgga
gaaatggttacatgggatccagtgttggaaacagtgatcccatacggaagtttaagaagc
atttttgaagattcttcctctcattcatcctacagcccttattacgttgtgttcgatatt
ttgtatcttaatgggaagtctttggtaaagtactcattagaatcaagaagacgaatatta
gagaaagtaattgttcgcgaatctcatcgtatgagtattctaccttacaaggtcggcagt
actattgaagatattgaagcagagttacggaatgttattcaagaaggatccgaagggttg
gttatcaagaaaccaagtggaagttatcaccttggagaacgaatggatgactggatcaaa
gttaagccttactatcttcagggtttcggagaagatttggattgccttattttaggcggg
tattttggccgaggtaagcagtcgggaaaaataaattcgtttctttgtggactacgcatg
gactacactccaaaagaccattctgagaagtttcagtcatttgttcgtgtaggtggtgga
tttacttactttgatcgcgatataattcgaaaggagacagaaggaaaatggcttccttgg
tcttctgatgctttagaatatatggaattggctggcactaaacaagactttgaaaagcct
gatatgtggattcatccgaaggattcattagttctccaaatcaaagctgcggaagttgta
gtatctaatcggtttaagacaaactatacgttaagatttccaagactagaaaaagtgagg
ctggatcgaagctggaaagacgcattgactatcaatgaattttttacgctaaaaaacgct
gttgaaaaacaggataacgtttcctttcatgttaataaaaaaagaaaagtgtctcaaaaa
agagaaaagcagaaaaagtttctttatgatgaacccacgtttaaaaaggaagcttctcct
cactctgatgtattgaaaaacttacattttgtcgtcctgcctccaacagaattgcatgaa
actaaagccggtttgcaacaaataataatcgaaaacggaggtttaattcatcagggtgtt
ggaaattttgggaaagaaaggttatttttagttgccgacagagtatctactagggtttct
atcgagcggagcaaaaacatgtgtactattattcgatctcaatgggtaatggacagtgta
aataatcaacgcttaatgccacaatggtcatatcttctcttttctaaagatgaaaaatat
tcatggaagacagcattggagtccttgagtgcgaaatccttgtctaatttattggtggaa
ttgaaacagctggacttgagtaaagagtactcaaaaatttccgatgacacttctattttg
aatcttacaatttcgaaggaagaagccagttttgttggtgcctttccttttttaaagttt
acagtattcttagatttgaaaggaatcgaaaattctgagttgtatgatgttcgaatgggg
caataccgcttaaccaaatgtatattgctatggaacggagctacaatagagaaagatatt
tcttcaaaaaaattgacacacgtggtaatgtttgtggaagattcaactcgtttagaacaa
ctaacaaaggcgtgcgaactatatcaaattgaacccaaatttgttaattttgaatgggtc
gttaatgagtggaaaaaggcgagtactaacatattaggctga
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