Strongylocentrotus purpuratus (purple sea urchin): 105446682
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Entry
105446682 CDS
T01019
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03018
RNA degradation
spu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105446682
09123 Folding, sorting and degradation
03018 RNA degradation
105446682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spu03019
]
105446682
03041 Spliceosome [BR:
spu03041
]
105446682
Messenger RNA biogenesis [BR:
spu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105446682
mRNA degradation factors
5'-3' decay
Lsm complex
105446682
Spliceosome [BR:
spu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
105446682
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
105446682
NCBI-ProteinID:
XP_030852295
LinkDB
All DBs
Position
Unknown
AA seq
132 aa
AA seq
DB search
MLPLSLLRTAQNHPMLVELKNGETYNGHLVACDNWMNINLREVICTSRDGDRFWRMPECY
IRGSTIKYLRIPDEVIDMVKEEVVSKGRGRGGGGRGRGRGGPGRGGAFGRGGGRGGGRGD
GKRGGRGGPPKS
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgttgcctctatctctgcttagaaccgctcagaaccaccctatgctggtggaactgaag
aacggggagacatacaatggccatcttgttgcatgtgataactggatgaatatcaatctc
agagaagtcatctgcacatcaagggacggtgaccggttctggaggatgcccgagtgctac
atcaggggaagcaccatcaaatacctcaggataccggacgaggtcatagacatggtcaag
gaagaggtcgtatccaaaggtcgcggccgtggaggtggaggtcgcggaaggggtcgtggt
ggtccaggtagaggaggtgcatttggtcgaggtggtggtcgaggaggaggacgaggcgat
ggcaagaggggaggaagaggaggaccaccaaagtcatag
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