KEGG   Strongylocentrotus purpuratus (purple sea urchin): 581252
Entry
581252            CDS       T01019                                 
Name
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
spu  Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:spu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    581252
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spu03400]
    581252
Enzymes [BR:spu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     581252
DNA repair and recombination proteins [BR:spu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     581252
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C zf-CCHH BRCT_2 RNA_ligase mRNA_cap_enzyme BRCT PNISR
Other DBs
NCBI-GeneID: 581252
NCBI-ProteinID: XP_030842461
LinkDB
Position
Unknown
AA seq 1049 aa
MRFKVYTAFNLGWSSLQRTFVRPEQQHLKHYTSAYRDAKCPSDSGLGRRGTALPKSYLGN
TLSSKFETEHKGGIVFFQSFLNPTALSSTLGKTFASVMDDEKSFMVDYARLGTSKCKKCK
QGIEKKSPRIAKLSTNPFSDDGSMMKNYFHINCVFETFVRARATTKKIEDPSDLDGFEKM
EEEEKKLIRKNIEELLSRVKTPKKTPAKKKATVQSVLSPGGQVVSSSKQPKPSTSQPSSS
HHTSAAASSSSSTPSPTPSKTSYQGDGSDPKHPDNSFREYRKLCARIADISGHHAKTKVV
AAYLKRGADGDTFSGDPYLVLKLLLPGVVKRVYNINSKQLVKLFSQIFGTDLDEMVTDLE
QGDVSETVRKFYEESKHTPPIKKSVLSIYDVDKFLDNMSMMTKELEQQRELAKITGKCTA
NDLKMVVRLLKHDLRISSGAKHILDALDPNAYEAFQASRDLLDVVSRVLANQKASNGVPG
MTKKLSVRAALMTPVLPMLAEACKSVEMGMRKCPNGMYAEIKYDGERVQIHKQGDNFQYF
SRSLKPVLPHKVTHIKDWIPKACPHGNSLILDSEILMVDKDGKILPFGTLGVHKKSAFQD
ANVCLFVFDCLHFNGEDLMDKPLKTRRKILEENLDEIPNRIMLSESKFVTKTRQLSGLIA
DVIREGLEGLVLKDVQSLYEPGKRHWLKVKKDYLKEGSMADSADLLVLGAFYGTGTKGGM
MSVFLMGVYDPHSDSFRTVTKCGNGLDDNTMEKVNRDLDMVKISKDSSKVPSWLRVNKTL
VPDFVIREPKKAPVWEIIGAEFTQSETHTAGGISIRFPRVTRIRDDKDFETATDLPRLRT
LFKKSKESTDVSAILGVQSSPSKVSAKRKKDDDDDDDDEEEITGFSFGKGGGTGASTSAK
GASPAKKAAESPAKKVKNERNGNNSNSPSPRKEKTMCKYGPDCYQKSKDHVEKFRHTGSP
SKQSPSKGLPNVFTGMVMYIPEGVKDYEKLQRFVIAYDGDVIDEASKSQATHIVGDAKTS
DKNDSSSSAENVTSDWLWQCIRMKKLVPV
NT seq 3150 nt   +upstreamnt  +downstreamnt
atgagatttaaggtctacacagcatttaatcttggttggagcagcttgcaaagaacgttt
gtgaggcctgagcagcaacatcttaagcattacacttcggcctaccgggatgccaagtgt
ccttctgatagtggcttaggtagacgtggtactgcattaccaaagtcttatctaggaaat
acactctcatccaaatttgaaactgaacataaagggggtatagtcttttttcaatccttt
ttaaaccctactgccctttcttctactttgggaaagacatttgcttcagtaatggatgac
gagaaatccttcatggtagactatgcacggcttgggacgtcaaaatgcaagaaatgcaag
caggggatcgagaagaagtcgcctaggatcgccaagctctcaacgaatcctttcagcgat
gacggaagcatgatgaagaattatttccacatcaactgtgtgtttgagacgttcgtccgg
gcgagagctacgacgaagaagatcgaggacccgagcgacttggatgggtttgagaagatg
gaggaagaagaaaagaagttgatcaggaagaatattgaagaactgttatcaagagtcaag
acacccaagaaaacaccagccaaaaaaaaagccacagtacaaagcgtcctctcaccgggc
ggacaagttgtatcctcgtctaaacaaccgaaacccagtacaagtcaaccctcctcctct
catcacacatcagcagcagcatcgtcctcctcatccaccccctcacccaccccctctaag
acctcctaccagggggacggcagtgaccccaagcatccagacaattcattccgagagtac
cgcaagctctgtgcccgcatcgccgacatctccggccaccatgctaaaaccaaagtcgtt
gccgcgtacctcaagcgtggcgctgatggagatacattcagtggggatccgtaccttgtt
ctcaagttgcttctacccggcgtagtgaagagagtctacaatatcaacagcaaacaactg
gttaagcttttcagtcagatatttggaacagacctggatgagatggttactgacctagag
caaggagatgtctcagagacggtgaggaagttttacgaggagagcaaacacacgcccccg
atcaagaagagtgttctcagtatctacgatgtggacaagtttctagacaacatgtccatg
atgacaaaggaactcgaacagcagagggagcttgccaagatcaccggcaaatgtacggcc
aacgacctcaagatggtggtccgtcttctgaaacacgaccttcgcatcagctctggagca
aagcacatacttgacgctctggaccccaacgcatatgaggccttccaagcctcaagggat
ctcctggatgtcgtcagtcgtgtcctcgccaaccagaaggccagcaacggagtgccgggc
atgacaaagaagctgagtgtcagggccgctctcatgacaccagtcttacccatgctggct
gaggcttgtaagtcagtcgagatgggcatgaggaagtgccccaacggcatgtacgcggag
atcaagtatgacggtgagagagtacagatccacaagcaaggggacaactttcagtacttc
agccggtccttgaaaccagtcctgcctcacaaggtgacccacatcaaggactggatccca
aaggcctgtccccatggcaacagtctcattctggacagtgagatcttgatggttgacaaa
gatggtaagatcctgccgtttggaacccttggtgtccacaagaaatcggccttccaggat
gccaacgtttgtctctttgtctttgattgtcttcacttcaacggagaagaccttatggac
aagcctctcaagacaaggagaaagatccttgaggagaacctagacgagatccccaaccgc
atcatgctgtccgagtccaagtttgtcaccaagacccggcagctctctggcctcatcgcg
gacgtcatccgggaaggtcttgagggtctggtcctcaaggatgtccagagcttgtacgag
ccgggcaaacgccactggctcaaggtcaagaaggactacctcaaggaaggttccatggcg
gactctgccgatctcctggtgctgggagcgttctacggcactgggaccaaaggtggcatg
atgtcagtcttcttgatgggtgtgtacgacccgcactctgactcgttccgcaccgtcacc
aagtgtggcaacggtctggatgataatacgatggaaaaggtcaaccgtgatctggacatg
gtcaagattagtaaggacagtagcaaggtgccgtcatggttacgagtcaataagaccctg
gtgccggactttgtcatcagagagcccaagaaagcgccagtgtgggagatcattggagca
gagttcactcaatcagaaactcacacagcaggaggcatctccatcaggtttcctagagtg
acacgtatccgtgacgataaagactttgagacggcaactgatctaccgagattgaggaca
ctattcaagaaatccaaggagagtactgatgtgagtgcaatactaggtgtccaatcctcc
ccgtccaaggtgtctgcaaagaggaagaaggacgacgatgatgacgacgatgacgaggag
gagatcacaggattcagctttgggaagggtggaggaacaggagctagcacctcagccaaa
ggggccagcccagccaagaaggcagcggagagtccggccaagaaagtgaagaatgagagg
aacggcaacaacagcaattcaccaagcccaagaaaggagaagacaatgtgcaagtatgga
cctgattgctaccagaagagtaaagatcatgtggagaaattcagacacaccggctcaccc
tcaaaacaaagtccatctaagggtttacccaacgtgttcacaggcatggtcatgtacatc
cctgagggagtgaaagattacgagaagctgcagcgatttgtgattgcctacgatggagat
gtcatcgacgaagcatccaaatcccaagccacccacatcgtaggtgatgcaaaaacatcc
gacaagaatgatagcagttcttcagctgagaatgtgacttcagactggctgtggcagtgt
atcaggatgaagaaactagtaccagtctaa

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