Strongylocentrotus purpuratus (purple sea urchin): 584774
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Entry
584774 CDS
T01019
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
584774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spu03019
]
584774
Messenger RNA biogenesis [BR:
spu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
584774
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
TDP43_N
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
584774
NCBI-ProteinID:
XP_030842879
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MDFIRVAATENETDPDSIIELPVEQDGTIMLSTIIAQFPSATGLKYRNPQSQGIRGLRVI
DERVYAPRSDGVWEDLIYVATFPKGIVLEQSISSENKRKGEDNRENPVGKTRKIEAKTVD
LIVLGLDYNTTDEEMKEYFGKYGELLMAHVKRDPVTQKSKGFGFIRYKDVDSQEGVVEKR
HKIDLSSRWCEVKYPNTGGAVQPSRKKLFIGRLTSDTTKEDLFDIFSKYGEVVDVFIPKP
FRGFAFVTMNSSKDADEIVGEDLIIKGNSVYINRAEPKARMMGKEGDRFYGDGGGGGGGG
YGGGGGGGYGNNMDSYHRGGSGGGGGYNRDRGGFRQGGGGGYGGGGGGGGGGGSYGGGGF
GGGRDGGRDGPGGGGGGGGGHGPMDRGSAGGGSGAGGGGGSGSGGQGNLSQMQLNQAVLA
AALSQAGLGMMGNMLGGLGGPGQAGTPGGGGSSNSGTAGSGSGGGGSSSAQGLSASDVGY
SNQSWSGQSPQSGETGGQYFTKSTGW
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggattttattcgtgtcgctgcaacggaaaatgagaccgatccggactccattattgaa
ctacctgtcgagcaagatgggaccatcatgctatcaacaatcatcgcccagttccccagt
gctaccggcctgaagtaccgtaacccgcagagccagggcatccgtggattgcgtgtgatt
gacgagcgtgtgtatgctccgcgatcagatggcgtttgggaagatctcatttacgttgct
actttcccaaagggaatagttctagagcaatcgatctcatcagagaacaagaggaaaggt
gaagacaaccgggagaacccggttggcaagacgagaaagatcgaggccaagacggtagac
ctgattgtcctaggcttagactacaacactaccgatgaagagatgaaggagtactttgga
aagtatggtgaacttctgatggcacacgtgaagagagaccccgtcactcaaaagtccaag
ggctttgggttcatccgctacaaggacgtcgactcccaggaaggcgtggtagagaagagg
cataagattgacctctcgagtcgatggtgcgaggtcaaatacccaaacacaggtggagca
gtgcaacccagtcgtaagaagctgttcattggaagactgacatcagacacaaccaaggaa
gatctctttgacatcttcagcaagtatggcgaggtggtcgatgtcttcatcccaaagccg
ttcagaggattcgcctttgtgacaatgaacagctccaaggatgctgatgagatcgtgggt
gaagacctcatcatcaagggtaacagtgtgtacatcaaccgagccgaaccaaaggcacgc
atgatgggcaaggaaggagaccgtttctatggtgatggtggcggaggaggcggtggtgga
tatggcggaggaggaggaggtggatatggcaataacatggactcataccatcgaggaggt
agcggcggcggcggtggctacaatcgtgacaggggtggcttcaggcaaggagggggtggt
ggctatgggggcgggggtggaggaggaggaggaggaggaagctacgggggcggaggattt
ggaggagggcgtgacgggggacgggacgggcccggaggcggaggcggaggtgggggcgga
cacggtcccatggacaggggctctgctgggggtggatctggggcaggtggaggtggtgga
agcggatccggtggacagggtaacctcagccagatgcaactcaaccaggctgtgctagca
gccgctctgagccaggcggggcttggtatgatgggtaacatgctgggagggcttgggggg
cccggccaggctggcacgccgggtggtggtggatcgagtaacagtggcacggccggaagt
ggtagtggaggaggaggcagctcaagtgcccaaggactctcagcgagtgacgtcggttac
tcgaatcaatcatggagtggccaatcccctcaaagtggagaaacagggggacagtatttc
actaagtcaacgggttggtag
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