Sphingobium sp. YG1: YGS_C1P2795
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Entry
YGS_C1P2795 CDS
T05858
Name
(GenBank) DNA polymerase bacteriophage-type
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
YGS_C1P2795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spyg03400
]
YGS_C1P2795
Enzymes [BR:
spyg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
YGS_C1P2795
DNA repair and recombination proteins [BR:
spyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
YGS_C1P2795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
BBD01540
UniProt:
A0A2Z6AHY9
LinkDB
All DBs
Position
1:complement(2986266..2987672)
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AA seq
468 aa
AA seq
DB search
MYRVALTAPDDFDGWRAAARRLALASVDPADIVWQVGDQSIDLFGDTPLPAERPGAGFAV
PRAFVDLAEKAILHSEPARFALLYALLCRLRGRPGLMEDKADPLLRRVDVLAKAVRRDIH
KMRAFVRFREISDDGGERFVAWFEPDHHIVRANAGFFMRRFAAMRWSILTPEISIHWDGE
ALLEGPGAKRTDAPDGDPVEALWKGYYAAIFNPARLKTGAMLSEMPKKYWRNLPEAALIP
DLIAGAQAREAAMIATAPLPEKVPKRQGDVATIWATVRHEAMGCTRCPLHRDATQMIFGE
GPLDAPLMIIGEQPGDQEDLAGRPFVGPAGQFLDRALAQAGVDRSRAYVTNAVKHFKFER
QGKRRLHQSPDAGEIEACRWWLGQEIDLIRPQIIVALGASAARAMLGKAVTIGRTRGAAI
ALKDGAEGWVTVHPSYLLRLPDAERQAAEQARFVDDLRMVAERVTAQG
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtaccgtgtcgcgctgacggcgccagacgatttcgacggctggcgggcggcggcgcgg
cggctggcgctggcgagcgtcgatccggcggatatcgtgtggcaggtgggcgatcagagc
atcgacctgttcggcgacacgccgctgccggccgagaggcccggtgcgggctttgccgtg
ccgcgcgcctttgtcgatttggccgagaaggccatcctccatagcgaaccggcgcgcttt
gccttgctttatgcgctgctgtgccggttacgcggccggccggggctgatggaggacaag
gccgatccgctgctgcgccgggtggatgtgctggccaaggcggtgcggcgcgatatccac
aagatgcgcgccttcgtgcgttttcgcgaaatatcggatgacgggggcgaacgcttcgtc
gcctggttcgagccggaccatcatatcgtgcgcgccaatgcgggcttcttcatgcgccgc
ttcgccgcgatgcgctggtcgatcctgacgcccgagatcagcatccattgggatggcgag
gcgctgctcgaagggccgggcgcgaaacggacggacgcgcccgacggcgatccggtcgag
gcgctgtggaagggctattatgccgccatcttcaacccggcacggctcaagaccggggcg
atgctgtcggaaatgccgaaaaaatattggcgcaacctgcccgaggcggcgttgatcccc
gacctgatcgccggcgcacaggcgcgcgaagcggcgatgattgcgaccgcgccattgccg
gaaaaggtgccgaagcggcagggggatgtcgcgaccatatgggcgacggttcggcatgaa
gcgatgggctgcacccgttgtccgctccaccgcgatgcgacgcagatgatattcggcgaa
gggccactcgacgcgccgctgatgatcatcggtgagcaaccgggcgatcaggaggatctg
gcaggccgcccgttcgtcgggccggcggggcaatttctggatcgggcgctggcgcaggca
ggcgtggaccgatcccgcgcctatgtcaccaacgcggtcaagcatttcaaattcgaacgg
cagggcaagcggcggttgcaccagtcgccggatgcgggcgagatcgaagcatgtcgctgg
tggctggggcaggaaatcgacctcatccggccgcaaatcatcgtcgcgctgggggccagc
gcggcgcgcgcgatgctgggcaaggccgtgacgatcggccgcacgcgcggcgccgcgatc
gcgctgaaggatggcgcggaaggatgggtgacggtgcatccaagctatctgctgcgcttg
cccgatgcggagaggcaagcggcggagcaggcgcggtttgtggatgatttgcggatggtg
gccgagcgggtgacggcgcaggggtga
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