Salpingoeca rosetta: PTSG_01247
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Entry
PTSG_01247 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K12597
protein AIR1/2
Organism
sre
Salpingoeca rosetta
Pathway
sre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTSG_01247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_01247
03016 Transfer RNA biogenesis [BR:
sre03016
]
PTSG_01247
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PTSG_01247
Transfer RNA biogenesis [BR:
sre03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PTSG_01247
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCHC
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
16077814
NCBI-ProteinID:
XP_004997218
UniProt:
F2U183
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MSAWDSGSDRGSDSDADSEAEFAAYRALHYSSISNAVPAATPGAQGPTTEEKHPATPSEY
AAQENGSTAHVQSPAALNTSVDDEPGRASAFRQRQLPKEPLFVEAYSTDDDGGNTDDSSR
ARQARRRRRKRGAGGADAAAEASKLNSSVDNFVLNATVSSVESVQVVEDSNSSSGSSGSS
SSSSSSSSSDSSSSSSSSSGDDSVVVVIDDDDEEEEDIAGHRQMHSASKTDTTESNTTAT
TATATASAPKPTAATAAAVIAAAKTVKYVEASSDDDADLWAADHDTGPKTYDRFSRARSF
IKCHNCRGSGHLARDCPEPKRAPYCRLCGLKGHTRSRCMHECCFNCGFPGHRTKSCDLPT
SRHHTRCKRCSQSGHLEWKCSDTWRQYAAIQSERDLEKRLRPAIGHRSVRFCCHCGEAGH
LVHSCPVPRRDSVRVSVVVPTSYDFAGSSAYFTSLPSSSSSASSSSSSSGKRKAGSGDGH
TMKRSKRGGDGREEGGVTRYARRVFEGAKKLIGRGKKGKGKRDGEAGEDSANKSSRKKKD
KKKKKREGGKGTDERQQRGSKRGDARAPAKRKNSNKKNKRSKQASSGDGGRVVTMGGGFR
HSRK
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgtgggactctggatcagatcggggatcggactctgacgcggattcggaggcc
gagttcgcagcatatcgcgccctccactactccagcatctccaatgccgtccccgcagcg
acgcccggagcacaagggcccacaacagaagaaaagcatcctgccacgccatcggagtac
gccgcacaggagaacggtagcacggcacatgtccagtcacctgcagcgctcaacacttcc
gtggacgacgagcccggccgcgcgtctgcctttcgccagagacagctcccgaaggagccg
ctctttgtcgaagcatacagcaccgacgacgatggcggaaacacagacgactccagccgc
gcgcgccaggcccgccgccgtcgccgcaagcgcggtgcaggcggtgcggatgcagcagct
gaagcgagcaagctgaacagcagcgtggacaactttgtactcaatgcaaccgtctctagt
gtggagagcgtgcaggtggttgaagactcgaacagcagcagtggaagcagtggaagcagc
agtagcagcagtagcagtagtagtagtgacagtagcagtagcagcagcagcagcagcggt
gacgactctgttgttgttgtcatcgatgacgatgatgaagaagaggaagacattgcaggc
catagacaaatgcacagcgcgagcaagacggacacaacagagagcaacactaccgccacc
accgccaccgccacagcatcggcgccgaaaccgacagcagccacggcagcagcggtgatc
gccgctgcaaagacggtcaagtacgttgaagccagcagcgacgacgacgccgacttgtgg
gcagcagaccacgacacgggcccaaagacatatgatcgcttctcccgtgcgcgctcgttc
atcaagtgccacaactgtcgtggatccggccatcttgcgcgcgactgcccagaaccaaag
cgggcgccgtattgtcgactgtgcggactgaagggccacacccgatcccgatgcatgcac
gagtgctgcttcaactgcggatttccaggccaccgcacaaagagctgtgacctaccaacc
agccgacaccacacgcgctgcaagcgctgttcacaaagcggccaccttgaatggaaatgc
tcggacacgtggcgccaatacgccgcaatccagtctgagcgcgatcttgagaagcggctt
cgcccggccatcggccaccgctccgtgcgcttctgctgccactgcggcgaggcaggccat
ctcgtccacagctgtccagtcccgcgccgcgattctgtccgcgtgagcgtcgtcgtcccc
acctcatacgactttgcaggctcaagtgcgtactttacgtcgcttccgtcatcatcatcg
tcagcatcatcgtcgtcgtcgtcgtcgggcaagcgtaaagcgggcagtggtgatggacac
acgatgaagcgcagcaagcgtggtggcgacgggcgcgaggaaggcggcgtgacacgatac
gcgcgacgcgtgtttgagggcgcaaagaagctgattgggagaggcaagaagggaaaaggc
aagcgcgatggcgaggcaggggaggactctgccaacaagagcagcaggaagaagaaggac
aagaagaagaagaagagggagggtggcaagggaacagacgagaggcaacagcgcggcagc
aagcgaggggatgcgagagcgcctgcgaagcgcaagaacagcaacaagaagaacaagcgc
agcaagcaggcgagcagtggcgatggcggccgagtggtcaccatgggcggcggattccgt
cactcacggaagtag
DBGET
integrated database retrieval system