KEGG   Salpingoeca rosetta: PTSG_01247
Entry
PTSG_01247        CDS       T04136                                 
Name
(RefSeq) uncharacterized protein
  KO
K12597  protein AIR1/2
Organism
sre  Salpingoeca rosetta
Pathway
sre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTSG_01247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sre03019]
    PTSG_01247
   03016 Transfer RNA biogenesis [BR:sre03016]
    PTSG_01247
Messenger RNA biogenesis [BR:sre03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     PTSG_01247
Transfer RNA biogenesis [BR:sre03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    PTSG_01247
SSDB
Motif
Pfam: zf-CCHC zf-CCHC_3
Other DBs
NCBI-GeneID: 16077814
NCBI-ProteinID: XP_004997218
UniProt: F2U183
LinkDB
Position
Unknown
AA seq 604 aa
MSAWDSGSDRGSDSDADSEAEFAAYRALHYSSISNAVPAATPGAQGPTTEEKHPATPSEY
AAQENGSTAHVQSPAALNTSVDDEPGRASAFRQRQLPKEPLFVEAYSTDDDGGNTDDSSR
ARQARRRRRKRGAGGADAAAEASKLNSSVDNFVLNATVSSVESVQVVEDSNSSSGSSGSS
SSSSSSSSSDSSSSSSSSSGDDSVVVVIDDDDEEEEDIAGHRQMHSASKTDTTESNTTAT
TATATASAPKPTAATAAAVIAAAKTVKYVEASSDDDADLWAADHDTGPKTYDRFSRARSF
IKCHNCRGSGHLARDCPEPKRAPYCRLCGLKGHTRSRCMHECCFNCGFPGHRTKSCDLPT
SRHHTRCKRCSQSGHLEWKCSDTWRQYAAIQSERDLEKRLRPAIGHRSVRFCCHCGEAGH
LVHSCPVPRRDSVRVSVVVPTSYDFAGSSAYFTSLPSSSSSASSSSSSSGKRKAGSGDGH
TMKRSKRGGDGREEGGVTRYARRVFEGAKKLIGRGKKGKGKRDGEAGEDSANKSSRKKKD
KKKKKREGGKGTDERQQRGSKRGDARAPAKRKNSNKKNKRSKQASSGDGGRVVTMGGGFR
HSRK
NT seq 1815 nt   +upstreamnt  +downstreamnt
atgtcagcgtgggactctggatcagatcggggatcggactctgacgcggattcggaggcc
gagttcgcagcatatcgcgccctccactactccagcatctccaatgccgtccccgcagcg
acgcccggagcacaagggcccacaacagaagaaaagcatcctgccacgccatcggagtac
gccgcacaggagaacggtagcacggcacatgtccagtcacctgcagcgctcaacacttcc
gtggacgacgagcccggccgcgcgtctgcctttcgccagagacagctcccgaaggagccg
ctctttgtcgaagcatacagcaccgacgacgatggcggaaacacagacgactccagccgc
gcgcgccaggcccgccgccgtcgccgcaagcgcggtgcaggcggtgcggatgcagcagct
gaagcgagcaagctgaacagcagcgtggacaactttgtactcaatgcaaccgtctctagt
gtggagagcgtgcaggtggttgaagactcgaacagcagcagtggaagcagtggaagcagc
agtagcagcagtagcagtagtagtagtgacagtagcagtagcagcagcagcagcagcggt
gacgactctgttgttgttgtcatcgatgacgatgatgaagaagaggaagacattgcaggc
catagacaaatgcacagcgcgagcaagacggacacaacagagagcaacactaccgccacc
accgccaccgccacagcatcggcgccgaaaccgacagcagccacggcagcagcggtgatc
gccgctgcaaagacggtcaagtacgttgaagccagcagcgacgacgacgccgacttgtgg
gcagcagaccacgacacgggcccaaagacatatgatcgcttctcccgtgcgcgctcgttc
atcaagtgccacaactgtcgtggatccggccatcttgcgcgcgactgcccagaaccaaag
cgggcgccgtattgtcgactgtgcggactgaagggccacacccgatcccgatgcatgcac
gagtgctgcttcaactgcggatttccaggccaccgcacaaagagctgtgacctaccaacc
agccgacaccacacgcgctgcaagcgctgttcacaaagcggccaccttgaatggaaatgc
tcggacacgtggcgccaatacgccgcaatccagtctgagcgcgatcttgagaagcggctt
cgcccggccatcggccaccgctccgtgcgcttctgctgccactgcggcgaggcaggccat
ctcgtccacagctgtccagtcccgcgccgcgattctgtccgcgtgagcgtcgtcgtcccc
acctcatacgactttgcaggctcaagtgcgtactttacgtcgcttccgtcatcatcatcg
tcagcatcatcgtcgtcgtcgtcgtcgggcaagcgtaaagcgggcagtggtgatggacac
acgatgaagcgcagcaagcgtggtggcgacgggcgcgaggaaggcggcgtgacacgatac
gcgcgacgcgtgtttgagggcgcaaagaagctgattgggagaggcaagaagggaaaaggc
aagcgcgatggcgaggcaggggaggactctgccaacaagagcagcaggaagaagaaggac
aagaagaagaagaagagggagggtggcaagggaacagacgagaggcaacagcgcggcagc
aagcgaggggatgcgagagcgcctgcgaagcgcaagaacagcaacaagaagaacaagcgc
agcaagcaggcgagcagtggcgatggcggccgagtggtcaccatgggcggcggattccgt
cactcacggaagtag

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