Salpingoeca rosetta: PTSG_09777 Help Entry PTSG_09777        CDS       T04136                                  Name (RefSeq) uncharacterized protein   KO K12604   CCR4-NOT transcription complex subunit 1 Organism sre  Salpingoeca rosetta Pathway sre03018   RNA degradation Brite KEGG Orthology (KO) [BR:sre00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     PTSG_09777  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:sre03019]     PTSG_09777 Messenger RNA biogenesis [BR:sre03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      PTSG_09777   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      PTSG_09777 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Not1 CNOT1_CAF1_bind DUF3819 CNOT1_HEAT DUF6415 Motif Other DBs NCBI-GeneID:  16069678 NCBI-ProteinID:  XP_004989136 UniProt:  F2UP12 LinkDB All DBs Position Unknown AA seq 2501 aa AA seqDB search MASKKGKDTSAEPDYHRLVKSLAEDPTAGRTLVFQLVGSIREDKKKKAEVKAMWNALHQT ASSPEFKRIRIPVFVDRHILILHLSDAACHYAQGLDSAAAAVFFLDVFSAFTLDKSEQIA TLQVCRYCGVKDIVDGAEKSLADLVKAFMLSGDLSTFDPALLRQMSTQLQREDLFRKYNV ATTQQVRAFHKKLSTEVANSMLLTKHARSRPARGSWHQAKPAHIPDDTISKAASLAKLVL DAGYSATGSVDAFVDLVRKAQITQLTPSILAFTLAAMAANLTTASTSTQVHGTDVSWEHT DKQLSSWDPTIIVAAVNKLSPKFDWASVSLNLDCPFPIATLSGLDFISQVLERAHKGPFD LRGLHGAWANVESQLALLTLVIDPANATDERVFNLFKQYTYRDSPREGLKNIHNLAEPTL RCWLSLDLIAALLNVGNSIHYARARQMFAPAMTHIPDVLMVGLAFAFAPDDVVAQHRQAG RTASSSGSTSSMASGSGPVAGDAAGAAGGNPLQDDLMLALMAVFMEQHPNTAPVLQKVLA VKGTLVLHGIVAWYRMQPSLTRLERVFVVARDIKAITNLLDSSDFDFVLELAVYSSTKEF LHVRKWMQNQLTTLRGPFALACLRFLQRKLTNPGPGFPKLDPSLVNTMVAALESSSLEPD IVQHIDNFRTGVPDAMISSIPPLNQATLPSLPHVGTTATGNGKGVETLVKSLPPLSPTQG QGQGQDAGATSAGQAASSSMQRPPPLLQQPPPPPGLNPEPLPPSPSAQPGSASELVPLRP GVHPEDAASKELMDAIAANLSLVQTGSKAPHEFVAHIGPSLAPKVHGNMGRVLEVLVHVL FTDLHTSDMNSAVATRIITEVINSKALGTHQLQPVLAYLLLMLQSNPPRHVLSVIANVMQ GSRTGLADYPHYVQQFTDAFDSLDSPKGPSAAGSHHPPHQHQQPDLVGSQLPPQHHRPHP HHMPQQHQQPQQQQQSRFQLFSVSNPSNSSSSAAAGTSPRQTRTQLFSLSNNNNAAGNSS SNGNGGKSKAGTRGGTSTGGGGDGGSSLVSPNMGHGGPGGAGASGAMSPTPRQMTAKRRN ISSMPILPPSPRSVQRISFIFNNLSEDTAATAAKDVAGFVDEYNYTWLAKYFVDERVATE GELHALYTKLYLGLNPTVRRAILDKTYAAATAILRKFNKGEQLSKQERTRLKHLGNWLGN ITLALNRPVVTTKLSLTNAIKSAYQRDLQAQAKAVEAQPPQQPQQQQAQSQQPQPKKKKG QQQQQQQQQQGSWEHMALTVTFVCKVLEGCKLSRVFRRTQPWVKEVFSLLNEVHEAVPRS TVQFDVELLFRHAEYDRDTFPKSSVLAGIQTTPPLHDGLGTLSFVEDLTKFGLTPMQAFQ FRNLVPNKIESVREYVTLTQAMRSSLADVPNLNSLVVNTFQACLAEVVVSARTRATNVAV TTAHRTLAKDFVYERDIKLFRTTALAMAQKFASNLAATIGRDSLKTSFVRKLKEQFGESM RLSSQQEKDTVLGKLADENMGLATAFLKMSCMGSVEPMLDDRFYEDYEIRRKQGSGPYYQ LWAQLPDALMPPKSSATFAKRLKEMFPDFSNPILKSDKPTTPDLTNRPVPGGIPGWNANQ PSYPPVDVRGTGHGAAQLQQQQQQQVAQPMLQQQQQQQQQQQQQQQQQARQPMPQQASQQ GSPSRQVQSAQVGQSPNMPPPQQQQQMQSPQYAGMDRRPFPPGLQPPMQQQQQQPQQAQS PQAPQAPQQQGQQGVSPMRAAQAPLFAGPAAQPGGGPPPPPTDAPTILDQLQRHVDALVS VVTKDKHAPHRHMSEALREFRALLGPVPAKVQEEVLVRMANMLLRRLFEDMTSQLPILRD VYVHAMLALRDWNDVFVEHTSQCYVSMDGTQKVDRWDDVAKLLCLNLLSPPVLDPYFVKL MNNGKEAFFVSNVESIMRKTVVDSRALLTTDFPETIGVLRRLAQKRSAEQQRHKELVASI DGVAAEEAETLRAAPFTAAMLHETEDGMRKKPHLERALRLYNEWFTAVWPSNNIDSFLER LTNNLLITEKSSAAFFSVAVDVSLTWSSRPGPWAETSDAVRAFFSLVSASFSRQIISQSI FAYLLPHIARIMQMEYSRAVQAASSDDGTAGIMQFNQRPYLFLVERLLAYLRADVHPFDA INGFLTFLSTTAPPNMEHFTFGWMHILSDRAFIPTVMLVPHADNIRREVANLIIVLLRFL APHLHKEGLTPPWLRLYESTLRLLAVTARDFPFFVSEFASTFVCCLPASAVALQNAVLWT APLKNAVPDMPPRTMRPPPLRINIKPLLGQLRVPMEAFFNQPTAEAVPAPLLTLCQLDAT QDTFQLLCLVMHVMAVLQTRHTRAPTAITRTPGVVLLRQLLSVDRPDFVYIAASAMATQL RYPNPLTSFFCYAFVELFELVPDLSKDILLRVLTERALTTGPTPFGISIALSHVCKADLL KMPFVIKNPAVTELIKKILAHIHAHAGPGQQKQQQATSSSA NT seq 7506 nt NT seq  +upstreamnt  +downstreamnt atggcgtcgaagaagggaaaggacacctccgcggagccggactaccaccggctcgtcaag tcattggcggaagacccaactgcagggcgcaccttggtgttccagcttgtcggcagcatt cgcgaagacaagaagaagaaggccgaggtcaaggccatgtggaacgccttgcaccagacg gcgtcctccccagagttcaagcgcatccgcatccccgtgtttgtcgacaggcacatcctc atcctccacctctccgacgcagcgtgccactatgcccagggtctcgacagcgcagcagct gccgtcttttttcttgacgtcttcagcgccttcaccctcgacaaaagcgaacagattgcc acactgcaagtgtgccgctactgtggcgtgaaagacattgtcgacggagcggaaaagtcc ctggccgacttggtcaaggcgtttatgctcagcggggacctttccacgtttgaccctgct cttctcagacagatgtcgactcagctgcagcgggaagacctgttccgcaagtacaacgtt gcgacgacgcagcaagttcgcgcgttccacaagaagctctccacagaagttgccaacagc atgctgttgacaaagcacgcccgcagccgtcctgcccgcggttcgtggcaccaggcaaag cccgcacacatcccagacgacaccatcagcaaggcggcaagcctcgccaagcttgtcctt gatgccgggtactctgcaacgggctctgtagacgcctttgttgatctcgtgcgcaaggcg cagatcacccagctcacgccgtccatcctcgcgtttacccttgctgccatggccgccaac ctgaccactgccagcacctcaacacaagtgcatggcactgacgtgtcatgggagcacacg gacaagcagctctcatcgtgggatccaaccatcatcgtggctgccgtcaacaagctgtct cccaagtttgactgggcgtctgtgtcgctgaacctcgactgcccattccccatcgccacc ctcagtggtctcgactttatctcccaagtcctcgagcgcgctcacaagggcccgtttgac ctgcgcggcctgcatggcgcgtgggcgaacgtggagagccagcttgcgctactgacgttg gtgattgacccagccaacgccacagacgagcgcgtcttcaacctcttcaagcagtacacg taccgggacagcccacgcgaagggctcaaaaacatccacaacctcgccgagccgacgctg cgctgctggctgtccctcgacctcattgccgccctcctcaacgtcggcaactccatccac tacgcccgcgcgcgccagatgttcgccccggccatgacccacatccccgacgtgctcatg gtgggcctggcgtttgcgtttgcgccggacgacgtcgtggcgcagcaccgccaggccggg cgcacggcgagcagctccgggtccacctcctccatggcctcgggctcgggccccgtggcc ggagacgccgccggcgccgcgggcggtaacccgctgcaggacgacctcatgctcgccctc atggccgtgtttatggagcagcacccaaacacggcccccgtcctgcagaaggtgctcgcc gtcaagggcaccctcgttctccacggcattgtcgcctggtaccgcatgcagccgagcctg accaggctggagcgcgtgtttgtcgtcgcccgcgacatcaaggccatcaccaacctcctc gactcgtcagactttgactttgtgctggagctcgccgtgtacagctccaccaaggagttt ctgcacgtgcgcaagtggatgcagaaccagctcaccaccctgcgcgggccctttgccctg gcctgcctgcgcttcctgcagcgcaagctcaccaaccccggccccggctttccaaagctc gacccgtccctcgtcaacaccatggttgccgccctggagagctcctcgctcgagccagac attgtgcagcacattgacaacttccgtacgggcgtgccggatgccatgatctccagcatc ccgcccctgaaccaggccaccctcccctccctcccacacgtgggaaccacggccacaggc aacggcaagggcgtggagacgctcgtcaagtccctgccgccgctctccccaacccagggc cagggccagggccaggacgcaggcgcaacttcggcaggccaggcagcctcctcgtccatg cagcgcccgccaccgctgcttcagcagccgccgccgccgccgggcctcaacccggagccc ttgccaccatcaccctcggcccagccggggtcggcgtctgagctcgtgccgctgcggcct ggtgtgcaccccgaggacgcggcatccaaggagctcatggacgccattgccgccaacctg tcgctcgtgcagacggggtcaaaggcgccgcacgagtttgtggcccacattgggccctcg ctcgccccaaaggtgcacggcaacatgggccgcgtcctggaggtcctggtgcacgtgctc ttcacggacctgcacacaagcgacatgaacagcgccgttgccacgcgcatcatcaccgag gtgatcaactccaaggccctcggcacccaccagctgcagcccgtgctggcgtacctcctg ctcatgctccagtccaacccaccgcgccacgtcctttccgtcattgccaacgtcatgcag ggcagccgcacaggcctcgcagactacccgcactatgtgcagcagtttacggacgcgttt gacagcctcgactcgcccaagggcccatccgcggcaggcagccatcacccgccgcaccag caccagcagcctgacctggtcggctcgcagctcccgccacagcaccatcgccctcaccca caccacatgccgcaacagcatcagcagccgcagcagcagcagcagtcgcggtttcagctc ttttccgtcagcaacccaagcaacagcagcagcagcgccgccgcgggcacgtccccacgc caaacgcgcacgcagcttttctccctgagtaacaacaacaacgccgccggcaacagcagc agcaacggcaacggcggcaagtccaaagccggcactagaggcggcaccagcacgggcggc ggcggagacggcggcagcagcctggtgagccccaacatgggtcacggcgggcctggaggg gcgggtgcctcgggcgccatgtcgcccaccccacgtcagatgacggccaagcggcgcaac atcagctccatgcccatcctgccgccctcgccccgcagcgtgcagcgcatctcgtttatc ttcaacaacctgagtgaggacacggccgcgaccgccgccaaggacgtggcgggctttgtg gacgagtacaactacacgtggctggcaaagtactttgttgacgagcgcgtggccacggag ggcgagctgcacgccctgtacaccaagctgtaccttgggctcaaccccacggtgcgccgc gccatcctcgacaagacatacgccgccgccacggccattctgcgaaagttcaacaagggc gagcaactgagcaagcaggagcgcacacggctcaagcacctgggcaactggctcggcaac atcacgctcgccctcaaccggcccgtcgtcaccaccaagctctcgctcacaaacgccatc aagtccgcgtaccagcgggatctgcaggcgcaggccaaggccgtagaggctcaaccccca cagcagccgcagcagcagcaagcacaatcacagcaaccacagccaaagaagaagaagggc caacagcaacagcaacagcagcagcagcaaggctcgtgggagcacatggccctgacggtg acctttgtgtgcaaggtgctggagggctgcaagctcagtcgcgttttccggcgcacgcag ccgtgggtgaaggaggtgttctcgctgctgaacgaggtacacgaggccgtgccacgctcg acggtgcagtttgacgtcgagctgctcttccgccacgcagagtacgaccgggacaccttc ccaaagtcgtcggtgctggccggcatccagaccacgccgccgctgcacgacggcctgggc acgctctcctttgtcgaggacctgaccaagtttggcctcaccccgatgcaggcgttccag ttccgcaacctggtccccaacaagattgagtctgtgcgggagtatgtgacgctgacgcaa gccatgcgctcgagcctggcggacgtgcccaacctcaacagcctcgtcgtgaacaccttc caggcgtgcctggcggaggtggtggtctcggcgcgcacccgcgccaccaacgtcgccgtc accaccgcgcaccgcaccctggccaaggactttgtctacgagcgcgacatcaagctgttc cgcacgacggcgctggccatggcgcagaagtttgcgtccaacctcgccgccaccattggc cgcgactcgctcaagacaagcttcgtgcgcaagctcaaggagcagtttggcgagagcatg cgcctcagctcgcagcaggagaaggacacggtgctgggcaagctggctgacgagaacatg ggccttgccactgcgtttctcaagatgtcgtgcatgggttccgtggagcccatgctggac gaccgcttctacgaggactacgagattcgtcgcaagcagggcagcgggccatactatcag ctgtgggcgcagctcccggacgccctcatgccgcccaagtcgtcggcaacctttgccaag cgcctcaaggagatgttccccgactttagcaaccccatcctcaagtcggacaaacccacg acacccgacctgaccaacaggcccgtcccaggcggcatccctggctggaacgcaaaccag ccctcgtacccgcccgttgacgtgcgcggcactggccacggagctgcgcagctgcagcag caacagcagcaacaggtggcgcagccgatgctgcagcaacaacaacaacagcagcagcag caacaacaacaacaacaacaacaggcacggcagccaatgccgcagcaggcttcgcagcaa ggctcgccaagcaggcaggtgcagtcagcacaggtgggccagtccccgaacatgccgcca ccacagcagcagcaacagatgcagtcgccccagtatgctggcatggaccgtcgccccttc ccgccaggtctgcagccacccatgcaacagcagcagcaacagccacaacaggcgcagtca ccacaggcaccacaagcgccacagcagcaagggcagcagggtgtttccccgatgcgtgcg gcccaggcgccgctgtttgctggccccgcagctcagcccggtggaggcccgccgccgccg cccacggatgcgcccaccatcctggaccagctgcagcggcacgttgacgcgctcgtctcc gtcgtcacaaaggacaagcacgccccgcacaggcacatgtcggaggcgctgcgggagttt agggcgctgctggggcccgtgccggccaaggtgcaggaggaggtgctggtgcgcatggcc aacatgctgctgcggcgcctgtttgaggacatgacgtcgcagctgcccatcctccgcgac gtgtacgtgcacgccatgctggccctgcgcgactggaacgacgtgtttgtggagcacacg tcgcagtgctacgtgtcgatggacggcacgcagaaggttgaccggtgggacgacgtggcg aagctgctctgcctcaacctgctctccccacccgtgctggacccgtactttgtgaaactg atgaacaacggcaaggaggccttcttcgtgagcaacgtggagagcatcatgcgcaagacg gtcgtggactcgcgcgccctcctcaccacggactttcccgagacgattggcgtgctgcgg cggctggcgcagaagcgctctgcagagcagcagcggcacaaggagctggtggccagcatt gacggcgtcgctgctgaggaggcggagacgctgcgcgcggcgccctttacggcggccatg ctgcacgagacggaggacggcatgcgcaagaagccccacctggagcgcgcgctgcggctg tacaacgagtggttcacagcggtgtggcccagcaacaacattgactcgttcctcgagcgg ctcacaaacaacctgctcatcacggagaagtcgagcgcggcgtttttcagtgtggcggtg gacgtgtcgctgacgtggtcgtcgcggccgggcccctgggcggagacgagcgacgccgtg cgcgccttcttctccctggtctccgcgtccttctcccgccagatcatctcccagtccatc tttgcctacctgctgccgcacattgcccgcatcatgcagatggagtactcccgcgccgtg caggccgctagcagcgatgacggcaccgctggcatcatgcagttcaaccagcggccgtac ctgttcctggtggagcgcctgctggcttacctgcgggcggacgtgcacccatttgacgcc atcaacgggttcctcacgttcctcagcaccacggcgccgcccaacatggagcactttacg tttggctggatgcacattctgtcggaccgcgcgtttatcccgacggtgatgctcgtgccg cacgcagacaacatccgccgcgaggttgccaacctgattattgtgctgctgcgcttcctt gcgccccacctgcacaaggagggcctcaccccgccctggctgcggctgtacgagagcacg ctgcgcctgctcgccgtcaccgcccgcgacttccccttctttgtcagcgagtttgcgtcc acctttgtgtgctgcctgccggcgtctgcggttgcgctgcagaatgcggtgctgtggacg gcgccgctgaagaacgccgtgccggacatgccgccacgcaccatgcgcccgcccccgctg cgcatcaacatcaagcctttgctcgggcagctgcgcgtccccatggaggcgtttttcaac cagccaacggcagaggccgtgcccgcgccgctgctgacgctttgccagcttgacgccacg caagacacgttccagctgctgtgcctggtgatgcacgtgatggcggtgctgcagacgcgc cacacgcgcgcgcctacggccatcacccgcacccctggcgtggtgctgctgcgccagctg ctctccgtggaccggccagactttgtgtacattgccgcctctgccatggccacgcaactg cgctacccgaacccgctcacgtcgttcttctgctacgcgtttgtggagctgtttgagctt gtgccagacctgagcaaggacattttgctgcgggtgctgacggagcgtgcgctgacgaca gggccaaccccgtttggcatcagcatcgccctcagccacgtctgcaaggcagacctgctc aagatgccgtttgtcatcaagaacccggcagtgacggagctgatcaagaagatccttgcg cacatccacgcacacgccggccccgggcagcagaagcagcagcaggccacttcatcctcg gcctga

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