Salpingoeca rosetta: PTSG_12983
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Entry
PTSG_12983 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sre
Salpingoeca rosetta
Pathway
sre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTSG_12983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_12983
Enzymes [BR:
sre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PTSG_12983
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PTSG_12983
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PTSG_12983
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
Motif
Other DBs
NCBI-GeneID:
16069507
NCBI-ProteinID:
XP_004988965
UniProt:
F2UPC9
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MSRRPPIQTAPSRKMGQIVKSRPPHEAERQKPTWRGLDLEQAGIVAISPALFQMQHLTHL
YLARNRLTTISPEIRHLRALRIVDLSYNRLRSIPPAFGDLTELNECMLSGNELSTLPFEF
GKLYQIKFLALDNNPWTEPIASHVATGTEALMQWLLDQAPTGPSPPDREWIQPKAISRAA
LQPYERAKRDKVSVFCYNILCDKYASRNMFKYCPSWALAWEYRKGKILTELANSKCDILC
LQEVSKSEFYQYFLGQLQKEGYHGAFKVKTRAAYQADETIDGCATFYSTKTYKMLYEHGI
DLQQLSVANSNGCNTVIDRCMPKDNVALFTVFEHAVTKKRVFVANLHLTWDPHFSDVKVV
QIVLALKAIREFLQENKLLDVPVMLMGDFNSMPDSGVYEFLATGKINPNHPDMQGYDYKA
FFDSVGTTHPFKLRSAYTTEMQYTNKTAGFVGIIDYIWYTEGSLLPQAVWGPVDESYMDR
VSGCPNPHFSSDHLALGAKLYLKS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggcgtccgccgatacagacggcgccatcacgcaagatgggacaaatcgtcaaa
tccaggccaccacacgaggcagaaaggcagaagccaacatggcgtggcctcgacctcgaa
caagccgggatcgtggccatctcgccggccctgtttcagatgcagcacctgacccacctg
tacttggcccgcaacagactcacaaccatcagcccggagattcgacacctgcgggcgctg
aggattgttgacctctcctacaaccgcctgcggtccatcccgccggcctttggcgacctc
acagagttgaacgagtgcatgctgtctggcaacgagctgtccacacttccctttgagttt
ggcaagctgtaccagatcaagttccttgcgctggacaacaacccctggacagaacccatt
gcctcgcacgtggcaaccggcacggaggcgctcatgcagtggcttctcgaccaggctcca
actgggccgagcccgcctgatcgggagtggattcagccaaaggccatttcccgggccgca
ctccagccctacgagagagccaaacgcgacaaagtcagcgtgttttgctacaacatcctc
tgcgacaaatacgcgtcgcgcaacatgttcaagtactgtccgtcgtgggcgcttgcgtgg
gagtaccggaaaggaaagatcctcaccgagctcgcaaactccaaatgcgacattctgtgc
ctgcaagaggtgtccaagtctgagttttaccagtactttctcgggcagctgcagaaggag
ggctaccacggcgccttcaaggtgaagacgcgggccgcgtatcaagctgacgagacaatt
gacggctgcgcaaccttctactcaaccaaaacgtacaagatgctgtatgagcacggcatt
gatctgcaacagctctccgtggccaacagcaacggctgcaacaccgtcattgacagatgc
atgccaaaggacaacgtggcgctgtttacggtgtttgagcacgctgtgacgaagaagcgc
gtgtttgtggccaatctgcatttgacgtgggacccccacttcagcgacgtgaaagtggtg
cagattgtgctcgccctcaaggcaatcagggagtttctccaggagaacaagctgctcgac
gtgcctgtgatgctgatgggcgactttaactccatgccagacagcggcgtgtacgagttc
ctggccacgggcaagatcaacccgaaccacccggatatgcaaggctacgactacaaggcg
tttttcgacagcgtgggcacaacgcacccgttcaagctgcggtccgcgtacacaacagag
atgcagtacacaaacaagacggcaggctttgtcggcatcatcgactacatctggtacacg
gaggggtcgctgctgccgcaagctgtgtggggacccgtcgacgagtcatacatggaccgg
gtgtctggctgcccgaacccccatttctcctccgaccatcttgcgctcggagccaaactt
tacttgaagtcctga
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integrated database retrieval system
