Sphingomonas rhizophila: H9L12_09620
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Entry
H9L12_09620 CDS
T07014
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
srhi
Sphingomonas rhizophila
Pathway
srhi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
srhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
H9L12_09620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srhi03400
]
H9L12_09620
Enzymes [BR:
srhi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
H9L12_09620
DNA repair and recombination proteins [BR:
srhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
H9L12_09620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
QNN66264
UniProt:
A0A7G9SEI9
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All DBs
Position
1876850..1878271
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AA seq
473 aa
AA seq
DB search
MIGAHHVTLASEDDFDGWRDAARGLAEAGVPPSAIAWQVDGGERDLFGGPETEPPPPGPS
FAVPRAFVDLARTVICHRDPERFALLYAMLLKLRSNKQALEDRADPLVDRLEGMAKEVRR
DAHKMHAFVRFREVEDDEGPRFVAWFEPDNHIVRREAGFFQRRFANMRWSILTPELTIHW
DGQNLTEGPGATRAEAPDGDPVEETWKTYYASIFNPARVKVKAMTKEMPKKYWRNMPETA
LIGDLLAGAQAREAEMIKRSTTVTATTPRPTGNLDASWAALKAEAARCTRCELHQCATQI
VFGEGPLDAAIVFVGEQPGDQEDLAGRPFVGPAGQLFNAALEEAGIDRTQAYVTNAVKHF
KFVQRGKKRIHSKPDTSEIEACRWWVDRERELIRPPLTVALGATAARSLTGKTVTISKSR
DAPLTLADGGECWITVHPSFLLRLPDEQVRREERAKFVADLQRIRKRAEALAA
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgatcggcgcccaccatgtcaccttggcctccgaagatgatttcgacggctggcgcgat
gccgcgcgtggcctggcagaagccggcgttccgcccagtgcgatcgcctggcaggtcgac
ggcggcgaacgcgaccttttcggcgggcctgaaaccgaaccgccaccgcccggaccgagc
tttgcggtcccgcgcgccttcgtagaccttgcccgtaccgtcatctgccatcgcgacccg
gaacggttcgccttgctctacgccatgctgctcaaactgcggtcgaacaagcaggcgctg
gaggatcgcgccgatccgctggtcgaccggctggaaggcatggccaaggaagtgcgccgc
gacgcgcacaagatgcacgctttcgtccgcttccgcgaggttgaggatgacgaggggccg
cgctttgtcgcctggttcgaacctgacaaccatatcgttcgccgcgaggcgggctttttc
cagcgccgcttcgccaacatgcgctggtcgatcctgacgccagaactgacaattcattgg
gacggccaaaatctgaccgaaggaccgggcgcgacgcgggccgaagcgcctgacggtgat
ccggtcgaggaaacgtggaagacctattacgcgtccatcttcaatccggcgcgggtcaag
gtgaaggccatgaccaaggaaatgcccaagaaatattggcgcaatatgccggagaccgcc
ctgatcggcgacctgctggcgggcgcgcaggcgcgggaggcggagatgatcaagcgcagc
acgaccgtcacggcaacgacgccccgtccgaccggcaacctcgacgcgtcctgggcagcg
ctgaaagcggaagcggcgcgctgcacgcgctgtgagctccaccaatgtgcgacccagata
gtgttcggcgaaggcccgctcgatgccgcgatcgtgttcgtgggcgagcagcccggcgac
caggaagatctggcgggccggccgttcgtcggaccggccggccagctattcaacgccgcg
ctggaggaggcggggatcgaccgcacgcaggcttatgtcaccaacgcggtcaagcatttc
aagttcgtgcagcgcggcaagaagcggatccattccaagccggataccagcgagatcgag
gcctgccgctggtgggtcgaccgcgaacgcgagctgatccgtccgcctctgaccgtggcg
ctgggcgccaccgcggcgcgatcgctgaccggaaagacggtgacgatcagcaagtcgcgc
gacgcgccgctgaccctcgccgacggcggcgaatgctggattaccgtccaccccagcttc
ctgctgcggcttcccgacgagcaggtgcggcgggaggaacgtgccaaatttgtcgccgac
cttcagcgcatccgtaaacgcgccgaggcgctcgccgcctag
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