Streptomyces rectiverticillatus: FGW37_32370
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Entry
FGW37_32370 CDS
T06927
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
srk
Streptomyces rectiverticillatus
Pathway
srk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
srk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FGW37_32370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srk03400
]
FGW37_32370
Enzymes [BR:
srk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FGW37_32370
DNA repair and recombination proteins [BR:
srk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FGW37_32370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QLE76465
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All DBs
Position
7406887..7407849
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AA seq
320 aa
AA seq
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MRIRTGRHTVEISRPEKVLFPGDGDGGGTAGDSARAAGLTKADLAEYYRTVARRMLPHLR
GRPLMLERCPDGVEGECFMQKDVPDHFPEWVHRAELAKEGGTVTHVVCDDTATLVYLAGQ
ACITPHRWLARADRPDCPDRLVVDLDPPGASGDDFTLVRETALLLRELLDELRLPSMVMA
TGSRGLHVLVPLDRRAPFDDVRAFARDLADVLAARDPDRLTTEPRKTARRGRLYLDTQRN
AYAQTAVAPYAVRARPGAPVAAPLSWDEVGDPALTAGRWTVTTVGSRLGDDPWPGEGAAA
PRGRSLGPARRRLDALRARS
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgaggatccgtaccggccgtcacaccgtggagatcagccgtcccgagaaggttctcttc
cccggagacggtgatggcggcggcaccgccggcgacagcgcccgggccgccggcctcacc
aaggccgacctcgccgagtactaccgcacggtcgcccggcggatgctgccgcatctgcgc
gggcggccgttgatgctggagcgctgcccggacggagtggagggcgagtgcttcatgcag
aaggacgtccccgaccacttccccgaatgggtgcaccgcgcggaactcgccaaggagggc
ggtacggtcacccacgtcgtctgcgacgacaccgccaccctcgtctacctcgcggggcag
gcctgcatcacgccgcaccgctggctcgccagggccgaccgcccggactgccccgaccgg
ctggtcgtcgacctcgacccgccgggcgcttccggggacgacttcaccctcgtacgggaa
accgccctgctgctgcgggagctgctggacgagctccggctgccgtccatggtcatggcc
accgggtcgcgcgggctccacgtcctcgtccccttggaccggcgcgcaccgttcgacgac
gtccgggccttcgctcgcgacctcgcggacgtgctcgccgcccgcgatccggaccggctg
accaccgagccgcgcaaaacggcccgccggggcaggctctatctcgacacccagcgcaac
gcctacgcccagacggctgtcgcaccgtacgccgtccgcgcccgccccggagctcctgtt
gccgcgccgctgagctgggacgaggtcggcgacccggcgctgaccgcgggccgctggacc
gtcaccacggtcggcagccgtctcggcgacgacccctggccgggcgagggggcggcggcc
ccgcgcggccggtcactgggaccggcccgccgcaggctcgacgccctgcgcgcacgtagt
tga
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