Streptomyces roseicoloratus: RGF97_03160
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Entry
RGF97_03160 CDS
T09671
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sroc
Streptomyces roseicoloratus
Pathway
sroc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sroc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RGF97_03160 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sroc03400
]
RGF97_03160 (ligD)
Enzymes [BR:
sroc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RGF97_03160 (ligD)
DNA repair and recombination proteins [BR:
sroc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RGF97_03160 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WMX44060
UniProt:
A0AA51Z6Y0
LinkDB
All DBs
Position
687467..688390
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AA seq
307 aa
AA seq
DB search
MSAATDTAAAVRVGGRTVEVPRPDKVLFPADGLTKADLADYYHRVARRMVPQLRGRPLML
ERHPDGIDGPGFLQKDVPDHFPDWLTRAELPKADGTVTYALCDDAASLVYLASQACVTPH
RWLSRADRPDHPDRLVFDLDPPGDDFDSVLRAARRLRALLDDLGLPSLPMTTGSRGLHVV
VPLLRRDAFDEVRAFARDVADVLAARHPDELTTAARKKERRGRLYLDVQRNGYGQTAVAP
YAVRARPGAPVAAPLDWAELDEPGLTARRWTVRDAAELLDREPWRDAPRGHSAAAARRRL
AELGEGG
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggcgaccgacacggcggcagccgtccgggtcggcgggcgcacggtcgaggtg
ccgcggcccgacaaggtgctgtttcccgcggacgggctgaccaaggccgacctggccgac
tactaccaccgggtggcgcggcgcatggtgccgcagctgcgcggccggccgctgatgctg
gagcgccaccccgacggcatcgacggccccggcttcctgcagaaggacgtccccgaccac
ttcccggactggctgacccgcgccgagctgccgaaggcggacggcaccgtcacgtacgcc
ctgtgcgacgacgccgcctcgctggtctacctggcgagccaggcctgtgtgaccccgcac
cgctggctctcgcgcgccgaccgccccgaccaccccgaccggctggtcttcgacctcgac
ccgccgggcgacgacttcgactccgtgctccgggccgcccgccggctgcgcgcgctcctc
gacgacctcgggctgccctcactgccgatgacgaccggctcgcgcggactgcacgtcgtc
gtgccgctgctgcgccgggacgccttcgacgaggtacgggccttcgcccgcgacgtcgcg
gacgtgctcgccgcccgccacccggacgaactgaccaccgcggcacgcaagaaggagcgc
cgcggccggctgtacctggacgtccagcgcaacggctacggccagaccgccgtcgccccc
tatgccgtacgggcccgcccgggcgcgccggtcgcggctccgctggactgggcggagctc
gacgaacccggcctcaccgcacgccgctggaccgtgcgggacgcggcggaactgctcgac
cgcgagccctggcgcgacgcgccgcgcgggcactccgccgcggcggcccggcggcggctc
gccgagctcggcgaaggcgggtga
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integrated database retrieval system
