Skermanella rosea: JL101_006380
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Entry
JL101_006380 CDS
T07666
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sroe
Skermanella rosea
Pathway
sroe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sroe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JL101_006380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sroe03400
]
JL101_006380
Enzymes [BR:
sroe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
JL101_006380
DNA repair and recombination proteins [BR:
sroe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JL101_006380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
ACP_syn_III
Motif
Other DBs
NCBI-ProteinID:
UEM05061
LinkDB
All DBs
Position
1354213..1355622
Genome browser
AA seq
469 aa
AA seq
DB search
MHAVELAHPVDFEGWRAAARRMVLADARPEAVDWRVGAQAGLFGDAAAPVVPEAVRNRAF
TVPKDFLELAETVVCHRDPARFALLYGLLWRLTHGDPKLLEVVSDRDVHRAEAMARAIRR
DIHKMHAFVRFREREGHYLAWFEPDHFIVERAAPFFARRFANMDWSILTPDRSVHWDGET
LHFTPGASRAEVPDEDALEDYWRSYYASIFNPARLKIAAMQSEMPRKYWHNLPEARLIAP
LIRDAGRRAAAMVESGVTLPAPKSGRWAEAVPDVRAPEPEGGLQACRRCTLWRNATQAVP
GEGPMGARLMLVGEQPGDQEDLAGRAFVGPAGQLLDRALAEAGIVRSDCYVTNAVKHFKF
TPRGKRRIHQKPDAGEVEHCRWWLAEEVAAVRPRLIVALGATAGRALLRREVAVQRERGA
VLRLEEGRSMLLTVHPSYLLRLPDPAAKRAEYDRFVTDLRLATSFAMTP
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcggttgagctggcccatcccgtcgatttcgaaggctggcgcgcggcggcccgg
cggatggtgctggccgacgcccggccggaggcggtggactggcgggtgggcgcgcaggcg
ggactgttcggcgatgcggcggcgccggtcgttccggaagcggtacggaaccgcgcgttc
accgtgccgaaggacttcctggagctggcggagaccgtcgtctgccaccgcgatccggcg
cgcttcgcgctgctctacggattgctgtggcggctgacccatggcgatccgaagctgctg
gaggtcgtgtcggaccgggacgtccaccgggccgaggccatggcgcgggcgatccggcgc
gacatccacaagatgcacgccttcgtccggttccgcgagcgggaggggcattatctcgcc
tggttcgagccggaccacttcatcgtggagcgcgcggcgccgttcttcgcccgccggttc
gccaacatggattggtcgatcctgacgccggaccgaagcgtccattgggacggggagacg
ctgcatttcacccccggggccagccgggcggaggtgcccgacgaggacgcgctggaggat
tactggcgcagctattatgccagcatcttcaacccggcccggttgaagatcgcggccatg
cagtcggagatgccgcggaaatactggcacaacctgcccgaggcgcggctgatcgccccg
ctgatccgcgacgccggccgcagggccgccgccatggtcgagagcggcgtgacgcttccc
gcgccgaaatccgggcgctgggccgaggccgtgccggatgtccgggcgccggagcccgag
ggcggcctccaggcctgtcggcgctgtactctgtggcggaacgcgacccaggcggtcccg
ggcgaggggccgatgggagcgcggctgatgctggtgggcgagcagccgggcgaccaggag
gacttggccgggcgggcgttcgtcgggccggcggggcagctgctggaccgcgcgctggcc
gaggccggcatcgtgcggtcggactgctacgtcaccaacgcggtcaagcatttcaagttc
acgccccgcggcaagcgccgcatccaccagaagcccgacgccggcgaggtcgagcattgc
cgctggtggctggcggaggaggtcgcggcggtccgcccgcgcctgatcgtggccctgggc
gccacggccggccgcgcgctgctgcgccgcgaggtcgcggtccagcgcgagcgcggcgcg
gtcctgcggctggaggagggccggtcgatgctgctgaccgtccacccgtcgtacctgctc
cggctgcccgacccggccgcgaagagggcggagtacgatcgtttcgtcaccgatctgagg
cttgctacctcttttgcgatgacgccgtga
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