Streptomyces reticuli: TUE45_05820
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Entry
TUE45_05820 CDS
T04246
Name
(GenBank) Putative DNA ligase-like protein/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
srw
Streptomyces reticuli
Pathway
srw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
srw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TUE45_05820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srw03400
]
TUE45_05820
Enzymes [BR:
srw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TUE45_05820
DNA repair and recombination proteins [BR:
srw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TUE45_05820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
CUW31083
LinkDB
All DBs
Position
I:complement(6526709..6527596)
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AA seq
295 aa
AA seq
DB search
MTPITEVEGRRVALSNLEKVLYPETGFTKGELLHYYATTAAALLPHLRDRAVSFLRYPDG
PEGQLFFTKNVPPGTPEWVTTAEVPRSSADSPARMVLVQDLPSLVWAANLVTEFHTHQWL
VQRPEEADRLVFDLDPGAPATIVHCCEVALWLRERLAADGIEAYPKTAGSKGLHLLAAVR
GSSSERTSEYAKALAVEAERAMPRLVVHRMTKSLRPGKVFVDWSQNAARKTTATPYTVRA
RRAPLVSAPVTWEEVADCRSPGQLELRAEDIAPRLQDLGDLMAPLLDPGSAAPVP
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctatcacagaggtggaggggcgccgggtcgcgctcagcaacctggagaaggtg
ctgtatccggagaccggcttcaccaaaggggagctgctgcactactacgcgaccaccgcc
gcggccctgctgccgcatctgcgcgaccgggcggtgtccttcctgcgctatccggacggc
cccgaggggcagctgttcttcacgaagaacgtgccgccgggtacgcccgagtgggtcacc
accgccgaggtgccgcggtcctcggcggacagcccggcccggatggtgctggtgcaggat
ctgccgagcctggtctgggcggcgaacctggtcaccgagttccatacgcaccagtggctg
gtgcagcgccccgaggaggcggaccggctggtcttcgacctcgatccgggcgcgcccgcg
acgatcgtgcactgctgcgaggtcgccctgtggctgcgcgagcggctcgcggcggacggg
atcgaggcgtacccgaagacggccgggtcgaaggggctgcatctgctggcggccgtgcgc
gggagttcttccgaacggacgtccgagtacgcgaaggcgctggcggtggaggccgagcgg
gcgatgccccggctggtggtgcaccggatgaccaagagcctcaggccggggaaggtgttc
gtcgactggagccagaacgcggcccgcaagaccaccgcgaccccgtacaccgtgcgggcc
cgccgagcgccgctggtgtcggcgccggtgacctgggaggaggtcgccgactgccgcagc
cccgggcagctggagctccgggcggaggacatcgcgccgcggcttcaggacctcggtgat
ctgatggcgccgctgctggatccggggtcggccgctccggttccgtga
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