Sinocyclocheilus rhinocerous: 107707983
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Entry
107707983 CDS
T04916
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03013
Nucleocytoplasmic transport
srx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107707983 (upf2)
03015 mRNA surveillance pathway
107707983 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107707983 (upf2)
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107707983 (upf2)
mRNA cycle factors
P-body specific factors
107707983 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
107707983
NCBI-ProteinID:
XP_016367600
UniProt:
A0A673K9B6
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MPAERKKSVNMEERETGSFSNKDRDADRQAAASRDKSKDETKMSAKKDGGKTAEDKKRRA
EEDKRKREEKERKKKEEEKQRAEEEQKKKEEEEKRQQEEQEKKLLEEEAKRQKEEEAAQL
KEKEEAEQLQQEAWERHHGRKELRVKNQHAPETRPEEAFFSRLDSSLKKNTAFVKKLRTL
TEQQRGSLSQDFDSLNLSKYIGEAVSSMVEAKLKISDVGCAVHLCSLFHQRYTDFAPHLL
AAWKRHFEARKEEKSPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGSDRET
HTHVSVIISFCKHCGDDIAGLVPRKVKNAVEKFGSSFPPCQIINAEKQQPFQNLLREYFT
SLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTLADLLD
ENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLDGGIWEDEDARNFYENMVDLKAFVPAI
LFKDNEKSSQTSKEAREGNSTEELEMELEALDITDEPIDLDAADETESEELAKKLLDEQE
QEDEEASTGSHLKLIVDAFIQQLPNCINRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVP
RQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIGE
LAKFKMFSKTDALHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMM
RKKQAQHLDVRYVTMVENAYYYCNPPPMEKTVRRKRPPLQEYIRKLLYKDLSKVTTEKVL
RQMRKLSWHDPDVKSYLICCMINIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGLLED
IRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFTSFGVNTDGSPSPLDP
PEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYVWWKKSLDVWTKDQPFPIDI
EYMITDTLELLRPKMKLCSSLDEACAQVTQLEREFLVKLGLEKDGRSSSAMGENEPLDED
DDDDEDEGGAETEEQSGNESEMNEPEEEEGSDNEEEEREEEEENTDYLTDSNKENETDEE
NNEVTLRSGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKSQLK
KSPAPSCTADADTDISATMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQEERM
RMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGR
RR
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgtaagaagtccgtcaacatggaggagagagagacgggctccttcagc
aacaaggacagagacgcagacagacaggccgccgcgtcccgcgacaagagcaaagacgag
accaagatgagcgcgaagaaggacggaggcaagacggcggaagataagaagagacgggct
gaggaggacaagaggaagagggaggagaaggagaggaagaagaaagaggaggagaagcag
agggcagaggaggagcagaagaagaaagaggaggaggagaagagacagcaggaggagcag
gagaagaagctcctggaggaggaagccaaacgacagaaagaggaagaggctgcacagctc
aaggagaaagaggaggcggaacagctccagcaggaggcgtgggagcgtcaccacggcaga
aaggagctgcgcgtgaagaaccagcacgcgccggagacgcgtcccgaggaggccttcttc
agccgcctggactccagcctgaagaagaacacggcgttcgtcaagaagctccgcacgctc
acggagcagcagcgcggctcgctgtcgcaggacttcgactcgctcaacctcagcaagtac
atcggcgaagccgtgagctccatggtggaggccaagctgaagatctcggacgtgggctgc
gccgtgcatctctgctccctcttccaccagcgctacactgatttcgcaccgcatctcctc
gccgcctggaagagacacttcgaggccaggaaggaggagaagtcgcccaacgtgagcaaa
ctgcggaccgacctgcgcttcatcgccgagctcaccatcgtgggtctgttcacggataaa
gaagggctgtcgctcatctacgagcagctgaagaacatcatcggctccgaccgagagacg
cacactcacgtttccgtcatcatcagcttctgcaagcactgcggagacgatatcgccggg
ctggtgccgcggaaagtcaagaacgcggtggagaagttcggctcatccttccctccctgt
cagatcattaatgcggagaaacagcagcctttccagaacctgctgagagaatatttcacc
tctctcaccaaacacctgaagaaagaccaccgagagctgcagaacatcgagagacagaac
aggcgtatcctgcactctaaaggagagctcagcgaggacagacataagcagtacgaggag
ttcgccacctcctatcagaagctgctggcgaacacgcaaacgctggctgatctgctggac
gagaacatgcctgaacttcctctggacaaaaccgtccaggaagaacacggtcctggcatc
gatatctttacgccggggaaaccgggagagtacgatctggacggagggatctgggaggac
gaggacgcgcgtaacttctacgagaacatggtggatctgaaggcgtttgtacctgctatc
ctcttcaaggacaacgagaagagcagccaaaccagcaaagaagcacgagagggaaacagc
actgaggagttggagatggagttggaagcgctggacatcactgatgagccgatagatctg
gacgcagccgacgagactgaaagtgaagaactggccaaaaagttactggatgagcaagag
caggaggatgaggaggccagcaccggctctcatctcaaactcatcgtggatgctttcatc
cagcagctcccaaactgcatcaacagagacctgattgacaaggctgctatggacttctgt
atgaacatgaacaccaagtccaatcgcaggaagttggttcgagctcttttcacggtgccc
agacagagactggatctgttgccgttctacgctcgtctggtggccactctacacccgtgt
atgtctgacgtggctgaagacctctgctcaatgctcaaaggagatttcagatttcatatc
agaaagaaggaccaaatcaacattgagaccaagaataagacagtgaggttcatcggggag
ttggccaagttcaagatgttttccaaaacggacgcgctgcactgcctcaagatgctgctg
tctgatttctctcaccatcatattgagatggcctgcacactgctggagacgtgtggacgc
tttctcttccgctccccggaatctcacctgcgcacgagcgtcttactggagcaaatgatg
cgtaagaagcaggctcagcatctggatgtgcgttacgtgacgatggtggagaacgcctat
tactactgcaacccgccgccgatggagaagacggtgcgcaggaagaggccgccgctgcag
gagtacatccgcaaactcctctacaaagacctgtccaaggtcaccactgagaaggtgttg
aggcagatgaggaagctgtcctggcacgaccctgatgtgaagagttacctgatctgctgt
atgatcaacatctggaacgtcaagtacaacagcatccactgcgtggccaatctgctggca
ggactggtggcgtatcaggaggacgtgggcattcatgtggtggacggcctgctggaggac
atccgcctcggcatggaggtgaaccagcccaagtttaaccagcggcggatcagcagcgct
aagttcctgggtgagctgtataactaccgtatggtggagtctgccgtcatcttccgcacg
ctcttctccttcacctcgttcggtgtgaacacagacggttccccgagcccgctggacccc
cccgagcacctgttccgcatccgcttggtctgcaccctgctggacacctgcggacagtac
ttcgaccgcggctccagcaagaagaagctcgactgcttcctcatttacttccagaggtac
gtctggtggaagaagagtctggatgtgtggactaaagatcagccgttccccatcgacatc
gagtacatgatcacagacacgctggagctgctgcggcccaaaatgaagctgtgctcgtct
ctggatgaggcctgtgctcaagtcacacagctggagagagagttcctcgtcaaactgggc
ctggagaaagacggccgctcctccagcgccatgggcgagaacgagcctctggatgaggat
gatgatgatgatgaagacgagggaggagccgagaccgaggagcagtctggaaacgagagc
gagatgaatgaacccgaggaggaggagggctcagacaatgaggaagaggagcgtgaggag
gaagaggagaacacagactatctgaccgactccaacaaagagaacgaaacggatgaagag
aataacgaggtcactctccgcagcggaggactcaaacacgtggcgtgtgccgaggacgag
gacttcatccaggcgctggacaaaatgatgctggaaaacctgcagcagcgcagtggagag
gcagtgaaggtccatcagctggatgtggccattcccctgcagttaaagagccagctgaag
aaaagcccggccccctcctgcaccgcagacgcagacacagacatcagcgccaccatgcag
ttcgtcatgctcacacgcaagggcaacaaacagcagtttaagatcctgaacgtgccgctg
tcgtctcatctggcggcgaatcacttcaaccagcagcaggcggagcaggaggagcgcatg
cgcatgaagaagctgacgctggacatcaacgagcggcaggagcaggaggactatcaggag
atgatgcagtcgctcgctcagagacccgctcccgcaaacaccaacagagagcgccggccg
cgataccagcaccccaaaggagcacccaacgcagacctcatcttcaagaccggcggcagg
agacgctga
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integrated database retrieval system
