Sinocyclocheilus rhinocerous: 107725234
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Entry
107725234 CDS
T04916
Name
(RefSeq) collagen alpha-3(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx04510
Focal adhesion
srx04512
ECM-receptor interaction
srx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107725234
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107725234
09142 Cell motility
04820 Cytoskeleton in muscle cells
107725234
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
srx04147
]
107725234
00536 Glycosaminoglycan binding proteins [BR:
srx00536
]
107725234
Exosome [BR:
srx04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107725234
Glycosaminoglycan binding proteins [BR:
srx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107725234
Hyaluronan
Extracellular matrix or blood plasma proteins
107725234
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
TssR_VWA
fn3
Motif
Other DBs
NCBI-GeneID:
107725234
NCBI-ProteinID:
XP_016389913
LinkDB
All DBs
Position
Unknown
AA seq
2979 aa
AA seq
DB search
MGKSRLLLFALWGVMVFGLFPNLEAQDAPATADLVLLIDGSESVGAANFPLVSDLVVQVI
EELAIGRDAIRVALMVYGANPEIQFYLNSFDNKESILSAIRGLRYPGGYEANLGAALEKV
ADSLLGQDAGSRAEEGVPQVLVVISAGESTDDVSQGERALKQASVYTFGIAVGVSATAQL
EAIATDKSFVLSAPDVRTVASMGDQILPYINGVAQRTIVIQTDFTEALAVGKRDIIFLID
SSMGTIVINAVREFIKRFIDTMPIGPDQVQVGVAMFSTTPRMEINLNSFSSKESLSSALA
KIKPKPSVEVNIGAALDFVRTNMLTAESGSRIQDQVPQLVLLLTSKKSKDSVQQPADALH
QMGVLTLAAGSRAADEAELKQIAFDDSVVFMLKDFRMLLRNPKEIISPLSTLSGIIVTET
PTETGPIVDVTTVHTQRVVRDIVFLVDGSSYVGNNLQPVLDFITEVVNRLDVRPERVRIG
LMQFAERQRTEFYLNTHNTKQDVLSAIAQLRLMGGRALNTGAALQYALTNHFQPAAGSRG
REGIQQVLVLITGGPSQDEVKRIADRVALEGVLTFAVGAGQVEDRFLKTVAFVENLAYYR
RNFADLSSVVGEIMTPLVTVVGETNTPVVTEKPGPSGGERDVAFLIDGSDDVRSDFPYIL
DFISKVIEPLDIGFDKVRVSVVQHSERPSPNFYLNTYRTKDEVLRAVSGLTLAGGRSLNT
GAALTFMKNTILSPANGGRAGKNIPQFLIVLTGGRSRDSVREPAVALKTEGVVPFGVGVK
NADPKQIEAISHNPSFAFNVKEFSQLNTVQERLKNYVKLPDQELKFILDTAESEGPKKDI
IFVIDGSEGVGREFPIIQEFVRRVVETLNVGENKIRVGVVQYGDSPYADIYLNSHRTKEG
VLNGIKELRQRGGRQRNLGRAIDFVSREVLTSRRGGRKQEGVPQFVVVVSGGKATDNIRP
YATALKQSGVIPLSIGTRDVDTQELQVTSYVPRFTYTVDDLPGLYTIQDTLITTLTELSS
EELAKLRPVYPTETVIPVPRGDKRDVVFLIDGTTKMRTEFPAIRDMVQRVVEKLDVGLDN
VRVSVVQYSDDPNLEFLLNEHSTKDEVRQAIRRMRSKGGNQLNTGQALEYVSKNIYQRSA
GSRVEEGVPQFLILVTGGKSNDDVSGPANQLKSSRVAPLAVGAHNADEEELKLISFSPEL
TYTIRDFQQLPRVEQELLTKVSTMTRDEIVAPTVPKVPLNLGRKDIIFLIDGSDSVGQSG
VAHIRDFILKVVDQLDVRPDQVRVALVQYGERPQTEFSLNSHNNKQSVISAIKRLRHMGG
RGADLAEAIKYVIRNELQATAGVRLAQASQHLVVLTGGRSTSDVSTYGPLLKGSRINCIG
IGTENADPRQLEQITTTSDDILQVATFPNLPNIQSKFIARLNGTIIEEPPTYFEEIDPVL
PQAKAADIVFLVDGSINLGRDNFKEVMEFILNLIDLFFTERDNLRIGLAHYATDVTDVFY
LNTYKNKDDIINAITRAEYKGGREIKTGNAIRHVQKTHFVKARGSRKDEGIPQILMVVTG
GRSRDDSKSAALALKDSGVRIYAVGVGDTEDELNNLGSEATTVARASTFQELSELNEQIL
ETLDDEVKGIGLCTGVKNATQECKLDVLVGFDVASQNIFAAQRSLETKVNAILQRITQMQ
PISCTSGQVPSIQVGMLVMDSASEPVQLDFTNRYTELLGPFKALRNRGPFVLNGATIKAY
ADRFKSQPSDSVKVVIHLTDGLDAQYNILKERVDLMRSAGVSSFILVALERVPRFEDAVL
LEFGRGFRYTRPLRVNLMDLDYELLEELDNIAERECCSVPCKCNGQRGDRGAVGVPGSKG
QSGGEGFSGHPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGYNGEKGEIGEIGLDG
INGEEGTSGVAGPPGDRGNPGQMGPKGAKGQAGDVGQTGIRGDPGIPGRDNNQRGPKGDP
GDAGPPGEPGVDGNKGGPGEPGRRGPDGRRGPPGQAGAPGRPGSDGLPGETGIGGSRGPA
GPIGAPGIRGEDGNPGPRGPGGVPGPAGEKGRRGAVGRKGEPGEPGPKGVVGPLGPRGEP
GEDGRDGFGIPGPKGRKGDEGFPGFPGPKVEAGDPGSKGGPGPRGNNGQRGTSGEPGGPG
QKGDIGYPGPYGRKGSRGTGPVPCDLVKKIRDNCPCCYGAQECPLYPTELAFALDASDGV
SRSAFNNMRDTVLRLVSDITVAESNCPRGARVALALYNNEVTTEIRFSDTQKKRALVERV
QGLQTQQTRKQRSLETAMNFVAQNTFKRVRSGFLVRKVAVFFVNGPVTTTQEFSAAALRL
YDAGISSVFLLNREDRQLTRALQLNNTALAQIIVLPSPGSPEYNNGIKKIMTCHICRDFC
APDQMCDYIPARGVRDRRDPTTDLDIDMAFILDSSESTWPSVFTEIKQYVALMTEQLEMS
PEPASTTHHARVALVQHAPYEYLHNGSGIPISVTFGLTDHKSPNSVQSFLQDKVHQLEGG
RALADALEGTVEHVFEKVPHPRHLKVLVLLVTGPVELHEERIIRAATEVKCKGYFIVVMA
VGKLFSAGDVRVLTQVASEPSDVFFKRVDRPSGFYDDHIQTFARLLPKYLGLENAFYLSP
EVSKKCQWHQSDQPHKFPFSLPQTEKHQKHHGQQEVHDRKHIETGMEKMHLVNVTSSGFA
LQWLSGDSKATHEVTVTRLKDHSLVLRKNVTGSHLSISELEAVETYHVVVNTHSVNGHVA
STYKGIVPTKSAHLKVLTVNDVMGIVPTAPLSKPETKTVEQKVTSEAMGIVSSAPLSKPE
IINNLMDPCSLDFDNGLPCKNYQAKWYFNRKNGFCTQFWYGGCGGNDNRFETEADCLKHC
MKTVAEPKASEEHVKAVLPPAPAPAALHSSVDICKLPKEEGSCAKFVLKWHYDPLGNCTR
FWYGGCGGNQNRFDTQDECEKACGKAAPVKQGIIAAVKT
NT seq
8940 nt
NT seq
+upstream
nt +downstream
nt
atggggaagagccggttattactgtttgccctctggggtgtaatggtttttggcctattc
ccaaatcttgaagctcaggatgcccctgcgacagccgaccttgtactcttaattgacgga
tcagagagcgttggagctgccaacttccccctcgtcagtgatttggtggtccaagtgatt
gaggagcttgccattggcagggatgcaatccgtgtagccctcatggtttatggtgccaac
cctgagattcagttctatctcaatagctttgacaacaaagagagtatcctcagtgctatc
cgggggcttaggtaccctggtggttatgaggcaaatctgggggccgctttggagaaggtg
gcagacagtctattgggccaagatgcaggaagcagggcagaggaaggggtgccccaggtg
ctggtggtgatcagtgctggggagtccaccgatgatgtcagtcagggcgagagggcccta
aagcaggccagtgtgtacacctttggcattgctgtgggtgtttctgctactgcccaactg
gaagctattgctacagacaaaagctttgttctgtctgctcctgatgtcagaacagtggca
agcatgggtgaccagatactgccatacattaatggggtcgcccagcgcaccattgtaatt
caaacagatttcacagaagctttggctgttgggaagagagatataattttcctcattgac
agtagcatgggtaccatcgtaatcaatgcagtgcgagaattcatcaaaaggtttattgac
accatgccaattggtcctgatcaggtgcaggtcggagtggccatgttttccaccacccca
aggatggagatcaacctcaactcattcagttcaaaggaatcactaagctctgccctcgca
aaaataaaacccaaaccttcagttgaagtcaacattggtgctgccttggattttgtgagg
accaacatgctcacagctgagagtgggagccgcattcaagatcaagtgccacagcttgtg
ttgctcctaaccagtaaaaaatccaaagacagtgtccaacaaccggctgatgcccttcat
caaatgggtgttctgactttggctgcaggctccagggctgccgatgaagctgagctcaag
caaatagcttttgatgacagtgttgttttcatgctaaaggacttcaggatgttgctgcgc
aaccccaaagaaattatctcccctctctctacattgtctggtattattgtaacagagact
ccaactgaaacaggcccaattgtggatgttactacagtccacacccaaagagttgtccga
gacattgtcttcttggtggatggatctagctatgttggaaataacctgcaacctgtactg
gacttcattaccgaagtggtgaacagactagatgttcgacctgagcgagtgcgcattgga
ctaatgcagtttgctgaaaggcagcgtacagagttttatctgaacactcacaacaccaaa
caggatgtgctctctgccatcgctcagctgagattgatgggaggacgtgcactgaacact
ggtgcagccctacaatatgccctaaccaaccacttccagcccgcagctgggtctcgtggg
agagaggggatccagcaggtcctggttttaataacaggaggaccatctcaagatgaggtc
aagaggattgcagaccgtgtagctttagagggtgttttgacttttgctgttggagctggc
caagtggaagatcgtttcttgaaaactgttgcttttgttgaaaatttggcatactacaga
agaaattttgctgacttgtcaagtgttgttggtgaaattatgacaccactggtcactgtt
gttggggagactaatactccagtagtgactgaaaaaccaggtccctctggtggagaaagg
gatgttgcattcttgattgatggctccgatgatgtgagaagtgactttccctatatcctt
gacttcatttccaaagtcattgagcctctagatataggctttgataaagtacgagtttct
gtggtccagcatagtgagagaccaagtcctaacttctacttgaacacttaccgaaccaaa
gatgaggtgctgagagctgtaagtggactcactctggcaggtggcagaagtttaaatact
ggagctgccttgactttcatgaaaaacaccattttgtcaccagcaaatggtggtcgagcc
ggtaaaaatattccccaatttttgatcgttttgactgggggaagatctagagatagtgtc
agagaacctgcagttgccctaaagactgagggagttgttccttttggtgttggagtgaaa
aatgcagaccctaaacagattgaggccatctctcacaatccatcatttgctttcaatgtg
aaggaattcagccagctcaacactgttcaggaaaggctcaagaactatgtgaaacttcca
gatcaagaactgaagttcattctagacacagcagagtccgaaggacctaagaaggacatc
atctttgtgattgatggctctgaaggtgttggtagagagttcccaattatccaggagttt
gtgcgtagagttgtggagaccctcaatgttggcgagaacaagatccgagtaggcgtggtg
cagtatggagattcaccatatgcagacatatacctcaactcacacaggaccaaagaaggt
gttctaaatggcattaaggaactccgacagcgaggggggagacagcgtaaccttggacgg
gccattgactttgttagtcgtgaagttctgacttctagacgtggtggaaggaaacaggag
ggagttccacaatttgttgttgtggtttcaggaggaaaagcaacagacaatataagacca
tatgcaacagcactgaaacagtcaggagtcatcccccttagcataggaacaagagacgtg
gacactcaggaattgcaagtgacatcctatgtccccagatttacctacacagttgatgac
ttgcctggactatatacaattcaggacacactcatcaccaccctgacagagctatctagt
gaggagttagccaaattgcgccctgtgtaccctacagagactgtaattccagtacctcgc
ggagataaaagggatgttgttttccttattgatggcacaacaaagatgcgcactgagttc
cctgccataagagacatggttcagcgagtggtggagaagttagatgttggtcttgacaat
gtgagagtctcagttgtgcagtacagtgatgatcccaatctggagtttcttctcaatgag
cactccactaaggatgaagttcgccaggcaatacgaagaatgagaagcaaaggtggcaat
cagcttaacactggccaagctctggaatatgtttcaaagaacatctatcaaagatcagct
ggaagccgtgtagaagagggtgtgccccagtttctcatcttggtaaccggaggaaagtca
aatgatgatgtgtctggccctgctaaccaactcaagtcaagccgcgttgctcccttagca
gttggcgctcataatgctgatgaagaggagttaaaattaatttcctttagtccagaacta
acatacaccattagagacttccagcaacttccaagagtggagcaagagcttttaaccaaa
gtcagtaccatgaccagagatgaaattgtggcccccactgtgcctaaagtcccactcaat
cttggaagaaaggacatcatcttcctcattgatggctctgacagtgttggacaaagcggt
gttgctcacattcgtgactttatcttgaaagtggttgatcagctagatgtacgacctgac
caagttcgtgtggctctggtacagtatggtgaaagacctcaaactgaattctctttgaac
tcccacaacaacaagcaatctgtcatctctgccattaagagattgcgtcatatgggtgga
cgtggtgctgacctagctgaggcgataaagtatgtcattcgaaatgagctccaggcaact
gctggggtacgtcttgcgcaagcttcccagcatttagttgtgctaactggtggaagatca
acctctgatgtatctacttatggcccgcttctcaaaggctctcgcatcaattgtatagga
attggtacagaaaatgcagacccaagacagctggaacagattactaccacttctgatgac
atcctgcaggtggctacattcccaaatcttccaaacatacagagcaaatttatagccagg
cttaatggaacaattatagaggagcctcctacttacttcgaagagatagatcctgtactc
ccacaggccaaggctgctgacattgtgtttttggttgatggctcaatcaatcttggcagg
gacaattttaaagaggttatggaattcattctcaatttaattgacctgttcttcactgag
agagacaatcttcgaattggtctagcacattatgctacagatgtgaccgatgtgttctac
ctcaatacttacaaaaataaggatgacattatcaatgccataactcgagcagagtacaag
ggaggtcgggaaattaaaacaggcaatgccattcgccatgttcagaaaacacactttgta
aaagcaagaggcagtcggaaggatgagggaattccacagatcctgatggtagtcactggt
ggacggtcaagggatgacagcaaatcagcggcactagctctcaaagacagtggtgtgcgc
atctatgctgttggggtgggtgacacggaggacgagctcaataatttgggcagtgaagct
acaacagtggcccgagccagcaccttccaagagctctctgaactgaatgagcagattttg
gaaacactggatgatgaggtgaaaggaataggactgtgcactggagtaaagaatgctaca
caagaatgcaagttggatgttcttgtcgggtttgatgtggcttcacagaacatctttgct
gctcaaaggtcattagagacgaaggtgaatgctattctccaacgcattacccagatgcag
cccatcagctgcacttctggccaggttccctcaatacaagtgggcatgctagtgatggac
tctgcctctgagcctgttcagctggacttcaccaacagatacacagagcttcttgggccc
tttaaggccctccgaaaccgtggaccttttgttctaaacggtgcgacaatcaaagcatat
gctgatagattcaagagtcagccttcagatagtgtcaaggttgtgatccacttaactgat
ggattagatgcccagtataacatcctgaaagagcgagttgatctgatgcgttcagctggt
gtcagtagtttcattcttgttgccctggagagagtgccacgatttgaggatgcagttctc
ttggaatttggccgtggctttaggtacacacgacctctgcgtgtcaacctcatggacttg
gattatgaacttctggaagaactggataacattgctgagcgggaatgctgctctgttccg
tgcaagtgtaatggccagagaggggacagaggagctgttggtgttcctggatcaaagggt
caatctggtggtgaaggcttcagtggacatcctggtgatgaaggcggtccgggagagaga
ggtccacctggtgtaaatggaactcaaggattccaaggatgtccaggtcaaagaggtgtt
aaaggatctcgaggatacaatggtgaaaagggtgaaatcggagagattggtttagatgga
atcaatggagaggagggaacaagtggtgttgctggccctccaggagatagaggaaaccct
ggccaaatggggcctaaaggggccaaaggccaggcaggagatgttggtcagactggaatc
cgtggtgatccaggcatccccggaagagacaacaaccagaggggtccaaaaggggatcca
ggcgatgctggcccaccgggagagccaggcgtggatggaaataagggaggtcctggtgaa
ccaggcagacggggccctgatggtagaagagggcctcctggccaagctggtgctcctgga
aggcctggaagtgatggtttaccaggagagacaggaattggaggatctcggggtcccgct
ggaccaattggagcacctggtattagaggagaggatggaaaccctggtccaagggggcca
ggaggagtgccaggacctgctggagaaaagggtagaagaggagccgttggccgaaagggt
gaaccaggggagccaggacctaaaggtgtcgttggacccttgggaccccgtggggagcct
ggtgaggatggacgagatgggtttggtatacctggtcccaaaggaagaaagggtgatgaa
ggtttccctggtttcccaggtccaaaggttgaagcgggtgaccctggttcaaagggagga
cctggacctaggggaaacaatggccagaggggtacctcaggggaacctggtggacctgga
caaaagggagatattggatacccagggccctatggccgaaaaggatccagaggaactggt
ccggtgccatgtgatctggtcaagaaaattagggataactgtccctgctgctatggtgct
caggaatgtcccctataccctactgagttggcctttgccctggatgcatcagatggtgta
tcacgctctgctttcaacaacatgcgggacactgttctccgcctggtcagtgacatcact
gttgctgagagcaactgtccccgaggtgctcgtgttgctctagcgctctacaacaatgag
gtgactactgagatccgcttttcagatacccaaaagaagcgagcacttgttgagcgagtt
caagggctccagactcagcagacccgtaagcagcgcagcttggagacagccatgaacttt
gtcgcacagaacacgttcaaaagagttcgcagtgggttccttgtgcgcaaggttgctgtt
ttctttgtcaacggccctgttacaaccacacaagaattcagtgctgctgctctacgcctc
tacgatgcaggaatttcctctgtattcctccttaaccgtgaagatcgccaactcacaaga
gccttgcagcttaacaacactgctttagcccagattatcgtcctaccctcacctggaagt
cctgaatacaacaatggcatcaagaagatcatgacctgccatatctgccgggacttctgt
gccccggatcagatgtgtgattatatccctgcgcgtggagtccgagaccgaagggatccc
acaactgacttggacatcgacatggccttcattcttgatagttcagagagcacctggccc
tctgtcttcacagagataaagcaatatgtggctttaatgacagaacagctagagatgtcc
cctgagccggccagcactacccatcatgctcgagtagcacttgttcagcatgcaccttat
gaatacttgcacaatggcagtggcattcccatcagcgtgacctttggtttgacagatcac
aagtcaccaaacagtgtccaaagcttcctacaggataaggtgcaccagctggaaggagga
cgcgcccttgcagatgctcttgaaggcactgttgagcatgtgtttgagaaggtgccacat
ccccgccatttgaaggtattagttctgttggtgactggaccagttgaactgcatgaggag
aggataataagggctgccactgaagttaaatgcaaaggatacttcatagtggtgatggca
gttggaaagctgttcagtgcaggtgatgtccgtgtcctgacccaagtggcaagtgagcct
tcagatgtattctttaagagggtggatagaccttcaggcttctatgacgaccatattcag
acatttgccagactgttgcccaagtaccttggccttgaaaatgctttctacttgtcacct
gaagtctctaagaagtgtcagtggcatcagagtgaccagccacacaaattcccattcagt
ttgccacaaacagagaaacaccagaagcatcatggacagcaggaggttcatgacagaaaa
catattgaaacaggtatggagaaaatgcatctggttaatgtcacctccagtggatttgcc
ctacagtggttgagtggtgattcaaaggccacccatgaggttactgtgactcgcctgaag
gatcatagtctagtgctaaggaaaaatgtgaccggcagccatctctccatttctgagttg
gaggcagtcgaaacctatcacgtagtggtcaacactcacagtgtcaatggtcatgttgcc
agtacctacaaaggcattgttcccacaaaatcagcacatctgaaggtccttactgtaaat
gacgtgatggggattgtgcccactgcaccattgagtaaaccagaaacaaaaacggtagaa
cagaaggttacgagtgaagcaatggggattgtgtcctctgcacccttaagtaaaccagaa
ataattaacaatcttatggacccatgttcacttgactttgacaatggactgccatgcaaa
aattaccaagctaagtggtactttaacagaaagaatggattctgtacacagttctggtat
ggaggttgtggaggaaatgacaataggtttgagactgaggctgactgcctcaaacactgc
atgaagacagtggctgaacctaaagcaagtgaagagcatgtcaaagcagttctcccccca
gcaccagctccagcagccctgcactccagtgtggatatctgcaagctaccaaaagaagag
ggctcctgtgctaaatttgtgcttaaatggcattatgacccgcttggaaactgtacccgc
ttctggtacggaggatgtggagggaaccagaatcgctttgatacacaagatgagtgtgag
aaggcttgtggaaaagcagcacctgttaaacaagggatcatcgctgcggttaaaacatag
DBGET
integrated database retrieval system
