Serratia plymuthica S13: M621_03305
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Entry
M621_03305 CDS
T02716
Symbol
ddl
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
sry
Serratia plymuthica S13
Pathway
sry00470
D-Amino acid metabolism
sry00550
Peptidoglycan biosynthesis
sry01100
Metabolic pathways
sry01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
M621_03305 (ddl)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
M621_03305 (ddl)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
M621_03305 (ddl)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sry01011
]
M621_03305 (ddl)
Enzymes [BR:
sry01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
M621_03305 (ddl)
Peptidoglycan biosynthesis and degradation proteins [BR:
sry01011
]
Precursor biosynthesis
Amino acid ligase
M621_03305 (ddl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
CPSase_L_D2
ATP-grasp_4
ATP-grasp_3
RimK
ATP-grasp
ATPgrasp_ST
TTL
ATPgrasp_YheCD
Motif
Other DBs
NCBI-ProteinID:
AGP42987
UniProt:
S4YC38
LinkDB
All DBs
Position
720909..721829
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AA seq
306 aa
AA seq
DB search
MADKVAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKVFI
ALHGRGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRL
QYAGAEKQNLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAALEEGFRHDDDVLVE
KWLSGPEYTVAMLGDQVLPSIRIQPAGVFYDYQAKYISDDTQYFCPSGLGAEQEAEMAAL
ALRAYRGLDCSGWGRVDVMQDSDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVAR
ILELAD
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaagttgccgtactgctgggtggcacctccgccgaacgtgaagtgtcattg
caatccggtgctgccgtgttggcagggctgcgggaagccggtatcgacgcccatggcatc
gatatccgcgatttcccggtaacccagcttaaagagcatgggtttaccaaagtgtttatc
gcgctgcacgggcgcggcggcgaggatggcaccctgcaggggatgctggaattccttgag
ctgccttataccggcagcggcgtgatggcgtcggcgctgaccatggacaagtggcgcacc
aagatggtgtggcagtcgatggggctgccggtcgcgccttatgtggcgcttaaccgtctg
cagtatgccggcgcagagaaacagaacctgattgctcgcgtggaggccctgggcctgccg
ctgatcgtcaagccgagccgcgaaggttccagcgtcggcatgagcaaggtaaccgaacgc
gatgcccttgaagcggcactggaagaaggtttccgccatgacgacgacgtgctggtggag
aagtggctgagtggccctgaatataccgtagcgatgctgggcgaccaggtgttgccttcg
atccgcattcagccggccggcgtgttttacgactatcaggccaagtacatttcggacgat
acccagtatttctgtccaagtggcctgggtgcggaacaagaggccgaaatggccgcactg
gcgttacgcgcctaccgtggactggactgcagcggttggggccgcgtggatgtgatgcag
gatagcgatggcagcttctatctgcttgaggtgaatacctcgccgggcatgaccagtcat
agcctggtgccgatggcagcgcgccagtctggtttaagtttctcgcagctggtagcgaga
attttggagttggccgactga
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