Serratia rubidaea: AXX16_1845
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Entry
AXX16_1845 CDS
T04417
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
srz
Serratia rubidaea
Pathway
srz03030
DNA replication
srz03410
Base excision repair
srz03420
Nucleotide excision repair
srz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AXX16_1845
03410 Base excision repair
AXX16_1845
03420 Nucleotide excision repair
AXX16_1845
03430 Mismatch repair
AXX16_1845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srz03032
]
AXX16_1845
03400 DNA repair and recombination proteins [BR:
srz03400
]
AXX16_1845
Enzymes [BR:
srz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AXX16_1845
DNA replication proteins [BR:
srz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AXX16_1845
DNA repair and recombination proteins [BR:
srz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AXX16_1845
NER (nucleotide excision repair)
GGR (global genome repair) factors
AXX16_1845
MMR (mismatch excision repair)
DNA ligase
AXX16_1845
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AXX16_1845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
AML57558
LinkDB
All DBs
Position
1991305..1993326
Genome browser
AA seq
673 aa
AA seq
DB search
MATTTETINQLRTQLRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDDESFLAFYKRVQDRLKSSEALTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITANVRTICAIPLRLTGDNIPRRLEVRGEVFMPQAG
FEKMNEEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHW
QRLMQFKAWGLPVSDRARLCSGSDEVLAFYRQVEQDRGGLGFDIDGVVVKIDDIDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVEERRPLDAREVVFPQHCPVCGSDVERVEG
EAVARCTGGLICAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKEYVTDPADLFGLSAG
LLTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLDALRA
ADVEALKLVPDVGEVVAKHVVNFFAEALNQQVIDKLVSAEIGISWPAPVVVAAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIA
VIDEAEMIRLLGD
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggccacaacaaccgaaacaatcaatcaactgcgaacccaattacgccatcatgaatac
cagtaccacgtgctggacgcgccggaaattcccgatgcggaatatgaccgtctgatgcgc
gagctgcgcgcgttggaagaggcgcatcccgaactgatcaccgccgactcgccgacccag
cgcgtcggtgcagcgccgctggcggcgtttgaccaggtgcgccatgaggtgccgatgctg
tcgctggacaacgtgttcgacgatgagagcttcctggcgttttataagcgggtgcaggac
cggctgaaaagcagcgaggcgctgaccttctgctgcgagctgaagctggacgggctggcg
gtcagtctgctgtatgaagacggcgaactggtgcgcgccgccacgcgcggcgacggcact
accggtgagaacatcaccgccaatgtgcgcaccatctgcgccattccgctgcgcctgacc
ggcgacaatattccgcgccggctggaagtgcgcggcgaagtgtttatgccgcaggccggc
tttgaaaaaatgaatgaagaggcgcggcgcaaggatggcaaggtgtttgccaacccgcgc
aacgccgccgccggatcgctgcgtcagctggatccgcgcatcaccgccaaacgcccgctg
accttcttctgctacggcgtcggcctgctggaaggcggtgagctgccgcgcagccactgg
cagcgcctgatgcagtttaaagcctgggggctgccggtcagcgatcgcgccagactgtgc
agcggcagcgacgaggtgctggccttttaccgccaggttgaacaggatcgcggcgggctg
gggttcgatatcgacggcgtggtggtgaagattgacgatatcgacctgcaggaacagctg
gggtttgtcgcccgcgcgccgcgctgggccaccgcctttaagttcccggcgcaggagcag
attacccaggtgcgcgaggtcgaattccaggtcggccgcaccggggcgattacgccggtg
gcgcggctggagccggtgctggtggccggcgttaccgtcagcaatgccacgctgcacaat
gccgatgaaattgagcgtctcgggctgcgcatcggcgatacggtgatcgtgcgccgcgcc
ggcgacgtgatcccgcaggtggtgggggtggtggaagagcgccgtcctctcgatgcgcgc
gaagtggtgttcccgcagcactgcccggtatgcggctctgacgtcgagcgggtggaaggc
gaagcggtcgcgcgctgcaccggcggtttgatctgtgcggcgcagcgtaaagaggcgctg
aagcacttcgtctcccgccgggcgctggacgttgacggtatgggcgacaaaatcatcgaa
cagctggtggaaaaagagtacgtcacagatcctgccgatctgttcggtctctctgccggc
ctgctgaccgggctggatcgtatggggccgaagtcggcgcagaacctggtgaacgcgctg
gagaagtcaaaacagaccaccttcgcccgtttcctgtatgcgctgggcatccgcgaggtc
ggcgaagcgacggcggccaacctggcggcgcacttcggctcgctggacgcgctgcgtgcg
gcggacgtagaggcgctgaaactggtgccggacgtgggtgaagtggtggcgaagcacgtg
gtgaatttctttgccgaagcgctgaatcagcaggtaatcgacaaactggtcagcgcggag
atcggcatcagctggccggcgccggtagtggtggcggcagaagagattgacagcccgttc
gccggtaaaaccgtggtgctgaccggctcgctgagccagctgtcgcgcgatgaggctaaa
gaccgtctgacggcgctgggggcgaaagtcagcggcagcgtctcgaagaaaaccgatctg
gtgatcgccggcgaggccgccggctccaagctggccaaggcgcaggagctgggcatcgcg
gtgatcgacgaagcggaaatgatccgcctgctgggtgactga
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