Sphingomonas sanxanigenens: NX02_01885
Help
Entry
NX02_01885 CDS
T03929
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssan
Sphingomonas sanxanigenens
Pathway
ssan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NX02_01885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssan03400
]
NX02_01885
Enzymes [BR:
ssan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NX02_01885
DNA repair and recombination proteins [BR:
ssan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NX02_01885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHE52138
UniProt:
W0A738
LinkDB
All DBs
Position
complement(388647..391223)
Genome browser
AA seq
858 aa
AA seq
DB search
MPRAATAKVTPAEERLAKYREKRDFARTAEPSGATEPTAGNGFVVQKHAASRLHYDFRLE
LDGTLVSWAVTRGPSSNPDDKRLAVRTEDHPLDYARFEGTIPKGEYGGGTVMLWDNGTWE
PIPGKDPSQTLPEGHLHFILHGRRMQGEWILFRLKPRGKEKGENWILRKVQDAYAGGSDA
ENWILRKVQDAYAGGSDDLIGTHLTSVDSGRTMEEIAAGKAVPKRKANAKTSTAATAAKK
TLPAAQPPRRKKAGVLPPFQPVQLAALVDHVPPGDRWLHELKYDGYRTLIAIGGGEGRAY
TRSGLDWSDRFAGLIAEALKLDVGSALIDGEAVVTLSDGCTSFQALQAALKSNPETIDYF
AFDLLELDGEDLTSLPLIERKEKLAALVGDTKERIRYSDHIVGNGEKLLASFCGAGVEGV
ISKRADARYSGSRSGTWLKTKCIRRQEFVIVGWTPSDKQRGFRSLLLGVNENGRLRYAGK
AGTGFTGDEIERLMEIMAPLERKGPTVDAPRAAVRGAHWIEPKLVAEIAYVEFTDEGVLR
HPSYLGLREDKKPEAVVIETETPVAIATAPARSSVKISNRERVIFPEGKLTKGQLADYYE
IVAPIMLPWAGSRPISLVRCPQGRSKKCFFQKHDAGSFGDDVKQVGIREKDGHDEPYLYV
DTPAGLLTCVQMGTIEFHGWGARIEDVEKADRLVFDLDPDEGLDFQDVVSAAFHVQDVLA
QMGLTTFPMVTGGKGVHVIAPLTPSAEWPVVKDFAHRFALALAQAEPARFTAALAKAKRT
GKIFIDYLRNQRGATAVMPYSARTREYAPISVPLTWEELRDLDKPSHWHIGDAAEMVKRA
ASKNLAHWGRADQILPDL
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgccacgagccgcgacagccaaagtcacacccgcagaagagcgtctcgccaaatatcgc
gaaaagcgcgacttcgcgcgcacggccgagccgtccggcgctaccgagcctaccgctggc
aacggctttgtcgtccagaagcatgcggcctcgcgcctgcactatgatttccgtctcgaa
ctggacggcacgctggtgagctgggcggtcacgcgcgggcccagcagcaaccccgacgac
aagcgcctcgcggttcgcaccgaggatcatccgctcgactatgcccggttcgaaggcacc
attcccaagggcgaatatggcggcggcacggtgatgctgtgggacaatggtacgtgggaa
ccgatccccggcaaggaccccagtcagacgctccccgaaggtcacctccacttcatcctg
cacggcaggcggatgcagggtgaatggatactttttcgcctgaagccgcgcggcaaggaa
aagggcgagaactggatcctgcgcaaggtgcaggatgcgtatgccggcggctcggacgcc
gagaactggatcctgcgcaaggtgcaggatgcgtatgccggcggctcggacgacctcatc
ggcacccatctcaccagcgtcgatagcggccgcacgatggaggagatcgccgccggcaag
gccgtgcccaagcgcaaggcgaacgccaaaacatccactgccgcgaccgctgccaaaaag
accctgcccgccgcgcagccaccccgccgcaagaaagccggtgtgctgcccccctttcag
cccgtgcaactagccgcgctcgtcgaccatgtgccacctggcgatcgctggctccacgag
ctcaaatatgacggctatcgaactctcatcgcgatcggcggcggcgaggggcgcgcctac
acccgctcgggcctcgactggtccgaccgcttcgccgggctgatcgccgaggcgctgaag
ctggatgtcggcagcgcgctgatcgacggcgaagccgtcgtgacgctctccgatggctgc
accagcttccaggctttgcaggccgcgctgaagagcaatcctgagacaatcgactatttt
gcgttcgacctgctcgagctcgatggcgaggatctgaccagtctgccgctcatcgagcgc
aaagagaagctggcggcgctcgtcggcgataccaaagagcgtatccgctattccgatcat
atcgtggggaatggcgagaagctgctcgccagtttttgcggtgcgggcgtcgagggcgtc
atctccaagcgcgcagacgcgcgttatagtggctcacgcagcggaacatggctcaagacc
aaatgcatacgccggcaggagttcgtcatcgtcggctggactccgtcagacaagcagcgg
ggattccgctcgctgctgctcggcgtcaacgagaatggcaggctgcgctatgccggcaag
gccgggacgggcttcacgggggatgagatcgagcggttgatggagatcatggccccgctc
gaacgcaaaggcccgaccgtggacgcgcctcgcgccgccgtgcgcggcgcgcactggatc
gagccgaagctggtcgcggaaatcgcctatgtcgagttcaccgatgaaggcgtgcttcgc
catcccagctatcttggcctgcgcgaggataagaagcccgaagccgtcgtgatcgagacc
gagacgccggtggcaatcgccaccgccccggcgcgcagcagcgtcaagatcagcaaccgc
gagcgggtgatctttcccgagggcaagctcaccaagggccagcttgccgactattatgag
atcgtcgctccgatcatgctgccctgggcgggcagccgcccgatcagcctcgtgcgctgt
ccgcagggccgatcgaagaaatgcttcttccagaagcacgatgccggcagtttcggcgat
gacgtcaagcaggtcggcatccgcgagaaggacgggcatgacgagccctatctgtacgtc
gatacgcctgcgggactgctcacctgtgtgcagatgggcacgatcgagtttcatggctgg
ggcgcgcggatcgaggacgtcgaaaaggccgaccggctcgtcttcgatcttgatccggac
gaggggctcgacttccaggatgtcgtctcggccgccttccatgttcaggacgtgctggcg
cagatggggcttaccaccttcccgatggtcaccggcggcaagggtgtgcatgtcatcgcg
ccgctcaccccctcggccgaatggcccgtggtgaaggacttcgcgcatcgtttcgccctg
gcgctcgcgcaggcggagccggcgcgcttcaccgcggcgctggcgaaggccaagcggacg
ggcaagattttcatcgactatttgcgcaaccagcgcggcgcgacagcggtcatgccctac
agcgcgcggacccgcgaatatgcgccgatctcggtgccgctgacctgggaggaattgcgc
gacctcgacaagccatcgcattggcatatcggcgatgcggcggagatggtgaagcgtgcg
gcgtcgaagaacctcgcccattggggccgcgccgaccagatcctccccgacctgtga
DBGET
integrated database retrieval system
