Sphingomonas sanxanigenens: NX02_20330
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Entry
NX02_20330 CDS
T03929
Name
(GenBank) recombinase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ssan
Sphingomonas sanxanigenens
Pathway
ssan03410
Base excision repair
ssan03430
Mismatch repair
ssan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NX02_20330
03430 Mismatch repair
NX02_20330
03440 Homologous recombination
NX02_20330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssan03400
]
NX02_20330
DNA repair and recombination proteins [BR:
ssan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NX02_20330
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NX02_20330
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NX02_20330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AHE55721
UniProt:
W0AF33
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All DBs
Position
complement(4299820..4301583)
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AA seq
587 aa
AA seq
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MTSVLNIAHSILGQPWRWRARAADAREDAMGSDDLVTQLLLARGCPPDALEAHRTPSIRA
FMPDPSIFRDMDRAAGRLADAVIAGEPVTVFGDYDVDGATSAALLIRLLRDLGLDPRAYI
PDRLMEGYGPSGEALVRIAKGGARLIVTVDCGAQAFEALEMARDVGVDVIVVDHHKCATA
LPVALALVNPNRLDEDEGRAHGHLAAVGVAFLLGAALLRTLRARGFFAGRAEPRLLDLLD
IVALGTVADVAQLRGLNRAFVAQGLKVMAQRRNVGLTALIEAARLERAPTATDLGFALGP
RINAGGRVGKSDLGVRLLTTEDPDEARAIALELNRLNEERRAIESAVQVEAEEAAVRQGN
RAVAVVAGQGWHPGVIGIVAGRLKEKLGRPAIVIALDEAGVGKGSGRSIGGVDLGAAVLA
AKDMGLLAAGGGHAMAAGLTVHGGGIDALADFLEERLAADVTRAQGERALLFDAVLAPGG
VTPAIVEALEAGGPYGVGWPAPRVATGPVRVVRADIVGTGHVRAVVAGDDGRSLKTVAFR
AAETALGQALLGAGPHRRLWLAGRARIDDWAARPAAELHLDDAAWAD
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgtgctcaacatcgcccattccatcctcggccagccctggcgctggcgcgcg
cgcgccgcggacgcgcgcgaggatgcgatgggcagcgacgatctcgtcacccagttgctg
ctcgcgcgcggctgtccccccgatgcgctggaggcgcaccgtacgcccagcatccgtgcc
ttcatgcccgacccctcgatcttccgcgacatggaccgtgccgccgggcggctcgccgac
gcggtgatcgccggtgagccggtgacggtgttcggcgattacgacgtcgacggcgcgacg
tccgcggcgctgctgatccggctgctgcgcgacctggggctcgatccgcgcgcttatatc
ccggaccggctgatggaaggctacggcccctcgggcgaggcgctggtgcgcatcgccaaa
ggcggcgcgcggctgatcgtgacggtcgattgcggcgcgcaggcgttcgaggcgctggag
atggcgcgcgacgtgggcgtcgacgtgatcgtggtggaccatcacaaatgcgccaccgcg
ctgccggtggcgctcgctttggtcaatcccaaccggctggacgaggatgaggggcgcgcg
cacggccatctcgccgcggtcggcgtcgccttcctgctcggtgccgcgctgctgcggaca
ttgcgcgcacgggggttcttcgccgggcgtgccgaaccgcggctgctcgacctgctcgat
atcgtcgcgctgggcacggtggccgatgtcgcgcagctccgcgggctcaaccgcgcgttc
gtcgcgcagggcctcaaggtgatggcgcagcggcgcaacgtcggcctgacggcgctgatc
gaggcggcgcggctggaacgcgcgccgaccgcgaccgatctcggcttcgcgttggggccg
cgcatcaatgccggcggccgcgtcggcaagtccgacctcggcgtgcgcctgctgaccacc
gaggatccggacgaggcccgcgccatcgcgctcgagctcaaccgcctcaatgaggaacgc
cgcgcgatcgagtcggcggtgcaggtggaggccgaggaggccgctgtccgccagggcaat
cgcgcggtggcggtggtcgcggggcaggggtggcaccccggcgtgatcggcatcgtcgcc
gggcgcctcaaggagaagctcggccgccccgcgatcgtcatcgcgctcgacgaggcgggc
gtcggcaagggctcgggccggtcgatcggcggcgtcgatctcggcgccgcggtgctcgcc
gcgaaggatatgggcctgctcgccgcgggcggcggccatgcgatggcggcggggctcacg
gtgcatggtggcggcatcgatgcgctcgccgatttcctggaagagaggctggcggcggac
gtcacccgtgcgcagggcgaacgcgcgctgctgttcgatgcggtgctggcgcccggcggg
gtgacgccggcgatcgtcgaggcgctggaggcgggcgggccctatggcgtcggctggccg
gcaccgcgcgtcgccaccggcccggtgcgcgtcgtgcgggccgatatcgtcggcaccggc
catgtccgcgcggtggtggcgggcgacgacggtcgttcgctcaagacggtggcgttccgc
gccgcggagaccgcgctggggcaggcgctgctcggcgcggggccgcatcgccgcctctgg
ctggccggccgcgcccgcatcgacgactgggcggcgcgcccggcggccgaactccacctc
gacgatgccgcctgggcggattga
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