Sphingomonas sanxanigenens: NX02_27130
Help
Entry
NX02_27130 CDS
T03929
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssan
Sphingomonas sanxanigenens
Pathway
ssan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NX02_27130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssan03400
]
NX02_27130
Enzymes [BR:
ssan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NX02_27130
DNA repair and recombination proteins [BR:
ssan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NX02_27130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHE57012
UniProt:
W0AKE6
LinkDB
All DBs
Position
5684921..5687416
Genome browser
AA seq
831 aa
AA seq
DB search
MAAADPLGTYNAKRDFAKTAEPAGKRGRAKGNGFIVQKHDATRLHYDFRLELDGVLKSWA
VTRGPSPNPEDKRLAVRTEDHPLSYGSFEGTIPKGEYGGGTVMLWDRGTWTPVPGKDPLK
TIEEGHLHFTLDGERMKGEWLLIRLKPRPGEKRENWLLRKIDDAFADASDALVGRALTSV
KTGRTMAEIEAGAPETSLKGKRGRAFDKAMQTADAATPAPKARAAPTRRKGRLPGFRAVQ
LATLVDHVPSGNGWLHEMKYDGYRCLLAIGGGKARVFTRSGLDWTDKFSDLAEAALALET
PAALIDGEIVRLDAKGKPDFSALQAALSEGEQGFLMFAFDLLALDGKDLTGLPNIARKEK
LAALLKGVEAPLVYAEHVLGAGEKLFEAMCAAGQEGIVSKKADAPYRGDRTKSWLKVKCT
RRQEFLILGWQPSSARGRALKSLFLATHADGVLRYAGKVGTGFDARTMDMLMTRLGRIER
MSPAAEIPRAVARGGRWVTPKLVAEIAFAEFTAEGVVRHASFLGLRDDKEGKDVTVETAT
AAPEAPAVRISNPDRLIFPEAKVTKGDLAAYYEEIGPAMAPWALHRPLSLVRCPQGRARK
CFFQKHDAGSFGDAVKHVDIREKDGGTEPYLYAESVEGLIACVQMGTIEFHGWGSSVPAI
EKPDRMVFDLDPDEAVGFGEVKKAARDIHDYLEDMGLASFPMLSGGKGVHVVVPLTADAE
WPAVKDFAQRFALSLSQAEPERFIGTMSKAKRKGRIFIDWLRNQRGATAILPYAARARPG
APVAAPVSWNELRKIESPATFSVKDAKKLLRRASSAALQGWGEAAQRLPEV
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgatccccttggcacctacaacgccaagcgcgacttcgcgaaaacggcc
gagcccgccggcaagcgcggtcgcgcgaagggcaacggtttcatcgtccagaagcatgat
gcgacccggctgcactacgacttccggctggaactggatggcgtgctcaagagctgggcg
gtgacgcgcggccccagccccaatcccgaggacaagcgcctcgcggtgcggaccgaggat
catccgctcagctatggcagcttcgagggcacgatccccaagggtgaatatggcggtggt
acggtgatgctgtgggaccgcggcacatggacgccggtgccgggcaaggatccgctgaag
accatcgaggaaggccatctccacttcaccctcgatggcgaacgaatgaagggtgaatgg
ctgctgatccggctgaagccgcgtccgggcgagaagcgcgagaactggctgctgcgcaag
atcgacgatgcttttgccgacgcgtccgacgcgctggtcggccgcgcgctgaccagcgtg
aagacgggccggacgatggcggagatcgaagccggcgcgcccgagacctcgctgaagggc
aagcgcggcagggcgttcgacaaggcgatgcagacggcggatgcggcgacgcccgcgccg
aaggccagggccgcgcctacccgccgaaaggggcggttgcccggctttcgcgccgtgcag
ctcgcgacgctcgtcgaccatgtcccatcggggaatggctggctgcacgagatgaaatat
gatggctatcgctgcctgctcgcgatcggcggcggcaaggcgcgggtcttcacgcgcagc
ggcctcgactggacggacaaattctccgacctcgccgaggccgcgctggcgctggagacg
ccggcggcgctgatcgacggggaaatcgtccggctggatgcgaagggcaagcccgatttc
tccgcgctgcaggcggcgctgtccgagggcgagcaaggcttcctgatgttcgctttcgac
ctgctggcgctcgacggcaaggatctgacgggtctgcccaacatcgcccgcaaggaaaag
ctcgccgccctgctcaagggcgtcgaagcgccgctggtctatgccgagcatgtgctcggc
gccggcgagaagctgttcgaggcgatgtgcgcggcggggcaggagggcatcgtctccaag
aaggccgatgccccctatcgcggcgatcgcaccaagtcctggctcaaggtcaagtgcacg
cgccggcaggaattcctgatcctcggctggcagccgagcagtgcccgcggtcgcgcgttg
aaatccttgttcctcgccacgcatgcggatggcgtgttgcgctatgccggcaaggtcggc
accggcttcgacgcgcgcacgatggacatgctgatgacgcggctcgggcggatcgagcgc
atgtcgccggcggccgagattccccgcgcggtcgcgcgcggcggtcgctgggtgacgccg
aagctggtcgccgaaatcgccttcgccgaattcaccgcggagggggtggtgcgccacgcg
agcttcctggggctgcgcgacgacaaggagggcaaggacgtgaccgtcgaaaccgccacc
gccgcacctgaggcgccggctgtccggatcagcaatccggaccggctgatctttcccgaa
gccaaagtcaccaagggggatctcgccgcttattatgaggaaatcggcccggccatggcg
ccctgggcgctccaccgcccgctcagcctcgtgcgttgtccacagggtcgggcgcgcaaa
tgcttcttccagaagcatgatgccggcagcttcggcgatgcggtgaagcatgtcgacatc
cgcgagaaggatggcggcaccgagccctatctttacgccgagagcgtcgaggggctgatc
gcctgcgtgcagatgggaacgatcgagttccacggctggggatcgtcggtacctgcgatc
gagaagcccgacaggatggtgttcgacctcgacccggacgaggcggtcggcttcggcgag
gtcaaaaaggccgcgcgcgacatccacgactatctcgaggatatggggctggcgagcttc
ccgatgctctcgggcggcaagggcgtgcacgtcgtggtgccgctgacggccgatgccgaa
tggcccgcggtcaaggatttcgcgcagcgcttcgcgctgtcgctctcgcaggcggagccg
gaacgcttcatcggcaccatgtccaaggcgaagcgcaagggccgcatcttcatcgactgg
ctgcgcaatcagcgcggtgcgaccgcgatccttccctacgcagcccgcgcccgccccggc
gcaccggtggcggcaccggtgagctggaacgaactgcgcaagatcgagagtccggcgacc
ttcagcgtgaaggatgcgaagaaactgctgcgacgggcatcatcggccgcgctgcaggga
tggggagaggccgcgcagcgactgccggaggtgtaa
DBGET
integrated database retrieval system
