Sus scrofa (pig): 100157302
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Entry
100157302 CDS
T01009
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03082
ATP-dependent chromatin remodeling
ssc04714
Thermogenesis
ssc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100157302 (SMARCA2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100157302 (SMARCA2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100157302 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100157302 (SMARCA2)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100157302 (SMARCA2)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100157302 (SMARCA2)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
100157302 (SMARCA2)
Chromatin remodeling factors
BAF complex
100157302 (SMARCA2)
PBAF complex
100157302 (SMARCA2)
GBAF(ncBAF) complex
100157302 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
100157302
NCBI-ProteinID:
XP_020919950
Ensembl:
ENSSSCG00000005232
LinkDB
All DBs
Position
1:complement(219624773..219815438)
Genome browser
AA seq
1573 aa
AA seq
DB search
MSTPTDPGVMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM
GSADFPQEGMHQMHKPMDGMHDKGVVEDIHCGSMKGTAMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGTLIPGDPQAMSQSNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQPPPQSQPQPQPQPPQQQQALV
NYNRPSGPGPELGGPSPPQKLPVPAPSGRPSPAPPAAAPPPAAAVPGPSVPQPAPGQPSP
ILQLQQKQSRISPVQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKAT
VELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQK
IEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETER
IEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKK
KRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQL
DAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQI
IETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVS
LYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAP
SVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMK
NHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPF
AMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKIL
YRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSN
GVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLD
GTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQ
DRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL
QAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEE
DELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM
EEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINY
KDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR
NHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESN
EEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQD
ENEQSEASGTDDE
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcccacagaccctggcgtgatgccccaccctgggccctcgccagggccagga
ccctctcctggaccaatccttggacccagtccaggacctggaccatccccaggttccgtc
cacagtatgatggggccaagtcctgggcctccgagtgtgtcacatcctatgccgacgatg
gggtctgctgacttcccacaggaaggcatgcatcaaatgcataagcccatggatggtatg
catgacaagggggttgtggaagatatccattgtggatccatgaagggcaccgccatgcga
ccacctcacccgggaatgggccctccccagagtccgatggatcaacatagccaaggttac
atgtcgccacacccatctccgttgggagccccagagcacgtttccagccctatatcggga
ggcggcccgaccccaccacagatgccaccgagccagccgggcactctcatcccgggcgac
ccgcaggcaatgagccagtccaacagaggtccctcgcctttcagtcccgtccagctgcat
cagctgagagctcagattttagcttacaaaatgctggcccggggccagcccctcccagaa
acactgcagcttgcagtccaggggaaaaggacgttgcctggcatgcagcaacagcagcca
ccaccgcagtcccagcctcagccgcagccgcagccgccgcaacagcagcaggcccttgtt
aactacaacagaccatctggcccggggccagagctgggcggcccgagtcccccgcagaag
ctgcctgtgcctgcgcccagcggccggccctcgcccgcaccccccgcagcagcaccaccg
cctgcggccgcagtgcctgggccctccgtgccgcagcccgccccagggcagccctcaccc
atcctgcagctgcagcagaagcagagccggatcagccctgtccagaaaccgcaaggcctg
gaccctgtggagattctgcaggagcgggagtatagacttcaggctcgcatagcccatagg
atacaggagctggaaaatcttcctggctctttgccaccggatttacgaaccaaagcaact
gtggaactgaaagcacttcggttactcaatttccaacgtcagctgagacaggaggtggtg
gcctgcatgcggcgggacacaaccctcgagacggccctcaactccaaggcatacaagcgg
agcaagcgccagaccctgcgggaagcccgcatgacagaaaagctggagaagcagcagaag
atcgagcaggagaggaagcgtcggcagaagcaccaggaatacctgaacagtattttgcaa
catgcaaaagattttaaggagtatcatcgatctgtggcagggaagatccagaagctttcc
aaggcagtggccacttggcatgccaacaccgaaagggaacagaagaaagagaccgagcgg
attgaaaaagagagaatgaggagattgatggctgaagatgaagaaggctacagaaaactg
attgatcaaaagaaagataggcgtttagcttaccttttgcagcagactgatgagtatgtg
gccaacttgaccaacctggtttgggagcacaagcaagcccaggcagccaaagagaagaag
aagaggaggcggaggaagaagaaagctgaggagaatgcagagggaggagagtctgccctg
ggtccagatggagagccaatagatgagagcagtcagatgagtgacctgcctgtcaaagtg
acccacacagaaactggcaaggtcctgtttggccccgaagcacccaaagcaagtcagctg
gatgcctggttggaaatgaatcctggttacgaagttgcccctagatcggacagtgaagag
agtgattctgattatgaggaggaggatgaggaagaagagtccagtaggcaggaaactgaa
gagaaaatacttttggatccgaacagtgaagaggtttctgagaaggatgctaagcagatc
attgagacagctaagcaggatgtggacgatgagtacagcatgcagtacagtgccaggggc
tcccagtcctactacacggtggcccacgccatctcagagagggtagagaagcagtccgcc
ctcctcattaatgggaccctgaagcattatcagctccagggcctggaatggatggtttct
ctgtataataacaatttgaacggaatcttagctgatgaaatggggctgggaaagaccata
cagaccattgcactcatcacttatctgatggagcacaaaagactcaatggcccctatctc
atcattgttcccctttcgactctctctaactggacatatgaattcgacaaatgggctcct
tctgtggtgaaaatttcttacaagggcacccctgccatgcgtcgctcccttgtcccccag
ctacggagtggcaagtttaatgtcctcctgaccacttacgaatacattataaaagacaag
cacattcttgcaaagattcggtggaaatatatgatagtggacgagggccaccgaatgaag
aatcaccactgcaagctgactcaggtcttgaacactcactacgtggcccccaggaggatc
ctcttgaccgggaccccactgcagaataagctgccggaactctgggccctcctcaacttc
ctcctccccacgatttttaagagttgcagcacatttgaacagtggtttaatgctccattt
gccatgactggagagagggtggacttaaatgaagaagaaactatattgatcatcaggcgt
ctacataaggtgttgagaccatttttactgaggagactgaagaaagaagttgaatcccag
cttccagaaaaagttgaatatgtgatcaagtgtgacatgtcagctttgcagaagattctt
tatcgtcatatgcaagccaaaggcatcctcctcacagatggttctgagaaagataagaag
gggaaaggaggtgctaagacacttatgaacactatcatgcaattgagaaaaatctgcaat
cacccctatatgtttcagcacattgaggaatcctttgcagaacacctgggctattcaaat
ggggtcatcaatggggccgagctgtatcgggcctcaggaaagtttgagctacttgatcgt
attctgccaaaattgagagcgactaatcaccgcgtgctgcttttctgccagatgacgtct
ctcatgaccatcatggaggattactttgcttttcggaacttcctttacctgcgccttgat
ggcaccaccaagtctgaagatcgtgctgctctgctgaagaaattcaatgaacccgggtcc
cagtatttcatcttcttgctgagcacgagagctggaggcctgggcctaaacctccaggca
gctgatactgtggtcatctttgacagcgactggaatcctcaccaggacctgcaagcacag
gaccgtgctcaccgcattggccagcagaacgaggtccgcgtactgagactctgtaccgtg
aacagcgtggaggaaaagattctcgcagccgccaagtacaagctgaatgtggatcagaaa
gtgatccaggcgggcatgtttgatcaaaagtcttcaagccatgagcggagggcattcctg
caggccatactggagcatgaagaggaaaatgaggaagaagatgaagtgcccgacgatgag
actctgaaccaaatgattgctcgacgagaggaggaatttgatctttttatgcgcatggac
atggaccggcggagggaggatgcccggaatccgaaacgcaagccccgcttgatggaggag
gatgagctgccttcctggattattaaggatgatgctgaggtggaaaggctgacatgtgaa
gaagaggaggagaaaatattcgggaggggttctcgccagcgtcgggatgtggactacagt
gacgccctcacggagaaacagtggctgagggccattgaagacggcaatttggaagaaatg
gaagaggaagtacggcttaagaagcgaaaaagacgaagaaatgtggataaagatccggca
aaagaagatgtggaaaaggccaagaagaggagaggtcgccccccagctgagaaactatca
ccaaatccccctaagctgaccaagcaaatgaacgctatcattgatactgtgatcaactac
aaagacaggtgtaacgtggagaaggtgcccagtaattctcagttggaaatagaaggaaac
agttcagggcgacagctcagtgaagtcttcattcagttaccttcaagaaaagaattacca
gaatactatgaattaattaggaaaccagtggatttcaaaaaaataaaggaaagaattcgt
aaccataagtaccgaagcctgggtgacctggagaaagacgtcatgcttctctgtcacaat
gctcagacgttcaacttggagggatcccagatctatgaagactccatcgtactacagtca
gtgtttaagagtgctcggcagaaaattgccaaagaggaagagagcgaggacgaaagcaat
gaagaggaagaagaggaagatgaagaggagtcagagtcagaggcaaaatctgttaaggtg
aaaatcaagctcaataaaaaagatgagaaaggccgggacaaaggaaaaggcaagaagagg
ccgaatcgaggaaaagccaaacccgtagtgagcgatttcgacagtgatgaagagcaagat
gaaaatgagcagtcagaagcaagtgggactgatgatgagtga
DBGET
integrated database retrieval system
