Sus scrofa (pig): 100511662
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Entry
100511662 CDS
T01009
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100511662 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100511662 (BARD1)
04121 Ubiquitin system [BR:
ssc04121
]
100511662 (BARD1)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100511662 (BARD1)
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100511662 (BARD1)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100511662 (BARD1)
Ubiquitin system [BR:
ssc04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
100511662 (BARD1)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
100511662 (BARD1)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
100511662 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank_4
Ank
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
RTT107_BRCT_5
zf-RING_UBOX
zf-C3HC4_3
zf-rbx1
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
100511662
NCBI-ProteinID:
XP_020930805
LinkDB
All DBs
Position
15:complement(117049483..117135889)
Genome browser
AA seq
777 aa
AA seq
DB search
MPGNRLPRVRSGNEPHPAPSMEPAGRGAWAHSRAALARLEKLLRCSRCTDILREPVCLGG
CEHIFCSNCISDCFGSGCPVCYTPAWIQDVKINRQLDSMIQLCSKLRNLLHDADSSDLKE
ETSRKSLFSDAEYKKNSIKMWFSPRSKKVRYVVSKVSVQTHPPMINDENAQQASLYEFVS
TSPPVDVSERAKKASTRCRKKQKKKTLAEINQKWNLEAEKEDGKLDSKEEFKEKLVSFCS
QPSVIASPQMNGEIDLLASGSVTESECLGSFTEVSLPLAEHIESPEMESKNEAVTPEKTL
CENVLDESKKSLPSRHNGNRGCRSRLTSPVSKRCRNSIPSTSGNSVKQTVLSENVPSPGC
SSPPSNKLKRGATLRRKTSNILDESISLSPGTPPSTLNSPSYRRMMSSPSAVKLSPSSLT
AVKRNHRGETLLHIASIKGDIPSVEYLLGNGSDPNVKDHAGWTPLHEACNHGHLKVVELL
LQHKALVNTTGYQNDSPLHDAVKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDSENMK
SLLLLPEKDESSSTSHCSAVNTGQRRDGPLVLIGSGLSSEQQKMLSELAAMLKAKKCAEF
DSAVTHVVVPGDTVQSTLKCMLGILSGCWILKFEWVKACLQRKKCEQEEKYEIPEGPRRS
RLNREQLLPKLFDGCYFYFGGTFKHHPKDNLIKLVTAAGGQILSRKPKPDSDVTQTINTV
AYHAKPDSDQRFCTQYIIYEDLSNHRPERVRQGKVWMAPSSWFIDCVMSFELLPLDS
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgccggggaaccggctgccgagggtccgctccgggaacgagcctcatcccgcgccctcc
atggagccggcgggtcgcggggcctgggcccacagccgcgccgcgctcgcccggctggag
aagctgctgcgctgctcgcgttgcactgatattctgagggagcctgtgtgtttaggagga
tgtgagcacatcttctgtagtaattgtataagtgactgctttggatccggatgtccagtg
tgttacacccccgcttggatacaagatgtgaagataaacagacagttggacagcatgatc
cagctttgtagtaagcttcgaaacttgctgcatgacgctgattcttcagatttgaaagaa
gaaacatctagaaaaagtttatttagtgatgcagagtataagaagaattcaataaaaatg
tggtttagtcctcgaagtaagaaggtcaggtatgttgtgagtaaagtttcggtgcaaacc
catcctcctatgataaatgatgaaaatgcccagcaggcctccctgtatgagtttgtctct
acaagccctccagtggatgtttctgagagggctaagaaggcttccacaagatgtagaaaa
aaacagaaaaagaagactttagctgaaatcaaccagaaatggaatttagaggcagaaaaa
gaagatggtaaactggactccaaagaggagtttaaggaaaagctggtgtccttctgtagc
cagccatctgttattgctagtccgcagatgaatggcgaaatagacttactagccagcggc
tctgtaacagaatctgaatgtttgggaagcttcaccgaagtctctttaccactggctgag
catatagagtcgccagaaatggagagcaagaatgaagcagtgactcctgagaagactctc
tgtgaaaatgtcttagatgaatctaagaaatccttgccgtcacgtcataatgggaaccgt
gggtgccgcagccgacttaccagtcccgtttctaagagatgtaggaacagcattccgagc
accagcggaaattctgttaagcaaacagtgctctccgaaaatgtgccatcgcctggatgt
tcttcaccaccttcaaacaagcttaaacgtggtgccacgttaaggaggaaaaccagtaat
atattagatgaatccattagcctttcaccaggtacgcccccttctacactgaatagtcca
agttacagacgaatgatgtccagcccctcagcagtgaagctgtcacccagtagccttacg
gctgtgaaaagaaatcatcgcggggagactttgctccatatcgcctcaattaagggcgac
ataccttctgttgaatacctcttagggaatggaagcgacccgaatgttaaagaccacgct
ggatggacgccattgcacgaagcctgcaatcatgggcacctgaaggtagtggagttgttg
ctccagcacaaggctttggtgaacaccaccgggtatcagaacgactcgccccttcatgat
gcagtgaagaatgggcacgtggatatagtcaagctgttactttcctacggagcctccagg
aatgctgttaacatatttggtctgcggcctgtggattatacagacagtgaaaatatgaaa
tcactattgctgctgccagagaaagatgaatcatcatcaaccagccattgctcagcagta
aacactggtcagcgcagggatggacctcttgtacttataggcagtgggctctcttcagaa
caacagaaaatgctcagtgagcttgcagcaatgcttaaggctaaaaagtgtgctgagttt
gacagtgcagtaacgcatgtcgttgttcctggtgatacagttcaaagcaccctgaaatgt
atgcttgggattctcagtggatgctggattctaaaatttgagtgggtgaaagcttgtcta
caaagaaaaaaatgtgaacaggaagaaaagtatgaaattcctgaagggccaaggagaagc
aggctcaacagagaacagctgttgccaaagctgtttgatggatgctacttctattttggg
ggaaccttcaaacaccatccaaaggacaaccttattaagcttgtcactgcagctgggggc
cagatcctcagtagaaagcccaagccagacagtgatgtgactcaaaccatcaatacagtc
gcataccatgccaaacctgattctgatcagcgcttctgcacgcagtatatcatctatgag
gatttgtctaatcatcgcccagagagagttcggcagggcaaagtctggatggctccttcc
agctggtttatagattgtgtgatgtcctttgagctgctccctcttgacagctga
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