Sus scrofa (pig): 100521258 Help Entry 100521258         CDS       T01009                                  Symbol CUX1 Name (RefSeq) protein CASP isoform X1   KO K09313   homeobox protein cut-like Organism ssc  Sus scrofa (pig) Brite KEGG Orthology (KO) [BR:ssc00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:ssc03000]     100521258 (CUX1) Transcription factors [BR:ssc03000]  Eukaryotic type   Helix-turn-helix    Homeo domain CUT     100521258 (CUX1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  CUT Homeodomain Homeobox_KN ATG17_like Motif Other DBs NCBI-GeneID:  100521258 NCBI-ProteinID:  XP_020941924 Ensembl:  ENSSSCG00000007681 ENSSSCG00000007683 LinkDB All DBs Position 3:9317145..9669999 Genome browser AA seq 1642 aa AA seqDB search MERAAGPLRNAYSDPARESKAPGAPGAPLDCGVRGCGPSAEPRAPRGAHAGAPHPAPEPL RCPGGAFLPAIPHPEERRALGVRPGPASSALAAPGQPRDSARWMLCVVEAELKRELDATA TVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAA FLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIETENQKLRETLDEYNKEFAEVKNQEV TIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKV QTLQTALEKTRTELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQL SSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLR ENSASQISQLEQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAGTQDA SRPLEVLLLEKNRSLQSENAALRISNSDLSGSARRKGKDQPESRRPGPLPASPPSQLPRN TGEQASNTNGTHQFSPAGLTQDFFSSALASPSLPLASTGKFALNSLLQRQLMQSFYSKAM QEAGSTSMIFSTGPYSTNSISSQSPLQQSPDVNGMAPSPSQSESAGSVSEGEEIDTAEIA RQVKEQLIKHNIGQRIFGHYVLGLSQGSVSEILARPKPWNKLTVRGKEPFHKMKQFLSDE QNILALRSIQGRQRENPGQSLNRLFQEVPKRRNGSEGNITTRIRASETGSDEAIKSILEQ AKRELQVQKTAEPAQPSSTASGGNSDDAIRSILQQARREMEAQQAALDPALKQAPLSQAD LTILTPKLIAPAPTSSVSSYSPLAISLKKPPSAPEPSAPAPPNALALKKEPQDAPGLDLP GAADSAQGVLRHGKSELGRGGSGGVWKDHWWGAVQPERKSSAPPEDPKAEEAGGGGCGSS GGKEKGGGQARAERGQLQGPSSAEYWKDWPSAESPYSQGSELSLTGASRSETPQNSPLPS SPIVPLSKPTKPSVPPLTPEQYEIYMYQEVDTIELTRQVKEKLAKNGICQRIFGEKVLGL SQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLNGELGQGVLPVQGQQQGPVLHSVTSLQ DPLQQGCVSSESTPKTSASCSPAPESPMSSSESVKSLTELVQQPCPPIDTSKDGKPPEPS DPPASDSSQPATPLPLSGHSALSIQELVAMSPELDTYGITKRVKEVLTDNNLGQRLFGET ILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLNDPNNVEKLMDMKRMEKKAYMKR RHSSVSDSQPCEPPSAGIDYSQGASPQPQHQLKKPRVVLAPEEKEALKRAYQQKPYPSPK TIEELATQLNLKTSTVINWFHNYRSRIRRELFIEEIQAGSQGQAGASDSPSARSGRAAPS SEGDSCDGVEAAEGPGPADAEESGGPAAAAKSQGGPAEAAAAPEEREEAPRPAEKAEPPP SGTPGPDATDDEGRPRAPPPPPPPPPPPPPPEGPADGPGPVPNPAAAPAAGEDAATSAAP PGEGPCRARDGADRSSALPSTSAPAAARRASSLQSLFGLPEAAGARDSRDNPLRKKKAAN LNSIIHRLEKAASREEPIEWEF NT seq 4929 nt NT seq  +upstreamnt  +downstreamnt atggagcgcgcggcaggtccactccgaaatgcctactccgatccggctcgtgaaagcaaa gccccgggggccccgggggccccgctggactgtggcgtgcggggctgtggtccgagcgcc gagccccgggcgccgaggggggctcatgctggtgctccccatccggcgcccgagccgctg cggtgcccagggggcgcgttcctgcctgccattcctcatccagaggaacggcgcgccctc ggggtccgcccgggacctgccagctccgcgctcgcggcgcctggacagccccgggactct gccaggtggatgttgtgcgtagtcgaagccgagttgaagagggaactcgatgccaccgca acagtattggcgaaccggcaagatgaaagcgagcagtccagaaagcggctcattgagcag agccgcgagttcaagaagaacactccagaggatttgcgcaagcaggtagcgccgctgctg aagagcttccaaggggagattgatgcactgagtaaaagaagcaaagaagctgaggcagcc ttcttgaatgtctacaaaagattgatcgatgttccagaccccgtaccagctctggacctc gggcagcagctccaactcaaggtacagcgcctacacgacatcgaaacggagaaccagaaa cttagggaaacgctggacgaatacaacaaagagtttgctgaagtgaaaaatcaagaggtt acgataaaagcacttaaagagaaaatccgagaatatgaacagactctgaagaaccaagca gagaccatagctctcgaaaaggaacaaaagttacaaaatgattttgccgagaaagagaga aagctacaagagacccaaatgtccaccacctcaaagctggaagaagccgagcataaagtt cagactctgcaaacagccctggaaaaaactcgaacagaattatttgacctgaaaaccaaa tatgatgaagaaattactgccaaggccgacgaaattgagatgatcatgacggaccttgaa agagcaaaccagagggcagaggtggcccagagggaggcagagaccttgagggagcagctc tcgtcggccaaccactctctccagctggcctcgcagatccagaaggcgccggacgtggag caggccatagaggtgctgacccgctccagcctggaagttgagctggcggccaaagagcgg gagatcgcccagctggtggaggacgtgcagcgactccaggccagcctcaccaagctgcgg gagaactcggccagccagatctcccagctcgagcagcagctgagcgccaagaacagcacc ctcaaacaactggaagaaaagctcaaaggacaggctgactatgaagaggtgaagaaagag ctcaacatcctgaaatccatggagttcgcaccctccgaaggagctgggacgcaggacgca tccaggcccctggaggtgctgctgctggagaagaaccgctcgctgcagtccgagaacgcc gccctgcgcatctccaacagcgacctgagcgggtcagccaggagaaaagggaaagaccag cctgagagtcggcgtcctggacctttgccggcctcccctccttctcagttgccccgaaac acgggggagcaggcttccaatactaatggtacacaccagttctcaccagcggggttaacg caagactttttcagctcagccctggcaagccccagcctacccctggcttctacgggaaaa tttgcactaaactctctcctccaacgacagctaatgcagtccttctactccaaggccatg caggaagcaggaagcacaagcatgattttttcaacaggtccatacagcacaaactccata tcttcccaaagtccattacaacaaagcccagatgtaaatggcatggccccatctcccagc caatcagaaagtgctgggagcgtctccgagggcgaggagatagacactgcagaaatcgcc cggcaggtgaaagagcagctgatcaagcacaatatcggacagcgcattttcggacattac gtcttgggactgtctcaagggtccgtgagcgagattctggcccggcccaagccctggaat aaactgacggttcgcggcaaggagcccttccacaagatgaagcagttcctctcggacgag cagaacatcctggctcttcgcagcatccaaggcagacaaagagagaatccaggccagagc ctgaacagactatttcaggaagtaccgaaacgaagaaatgggtctgaaggtaacatcacc acccggatccgagcctcagagaccgggtccgacgaagcaatcaagtccatcctggaacag gccaaaagggagctgcaagtgcagaaaaccgcagagccggcccagccctcctccacggcc agcggcgggaactcggacgacgccatccgctccatcctgcagcaggcccgccgggagatg gaggcgcagcaggccgccctcgaccccgccttaaagcaggcgccgctgtcgcaggccgac ctcaccatcctcacccccaagttgatcgcccccgcgcccacgtcgtcggtgtccagctac tccccgctggccatctccctgaagaagcccccctcggcacccgagcccagcgcccccgct ccgcccaacgccctggccctgaagaaggagccccaggacgcgcccgggctggacctcccg ggcgccgccgactctgcacagggcgtcctgagacacggaaagagcgagctgggccgaggt ggcagtggcggcgtgtggaaggaccactggtggggcgccgtccagcccgagaggaagagc agtgctccccccgaggaccccaaggctgaagaagctggtggcggcggctgcggcagcagc ggcgggaaggagaagggcggcggccaggcgcgggccgagcgcggccagctccagggcccc tcctcggcggagtactggaaggactggcccagcgccgagtcgccctactcccagggctcg gagctgagcctgaccggagccagccgcagcgagacgccccagaacagccctctgccctcc tccccgatcgtgcccctgtccaagcccaccaagccctcggtgcccccgctgacccccgag cagtacgagatctacatgtaccaggaggtggacaccatcgagctcacccggcaggtgaag gagaagctggccaagaacggcatctgtcagaggatcttcggggagaaggtgctgggcctg tcccagggcagtgtcagcgacatgctgtcccggccgaagccgtggagcaagctgacccaa aaaggccgcgaacccttcatccggatgcagctctggctgaatggcgagctgggccagggt gtcctgcccgtccaggggcagcagcaagggccagtcctccactccgtgacgtcgctccag gaccccctacagcagggctgcgtgagctcagaaagcactccaaagacctcggccagctgc agccctgcgcctgagtcacccatgagctcgagcgaatccgtgaagagtttgaccgaactg gtccagcagccctgtccccccattgacacgagtaaggatggcaaaccgccggaacccagc gacccgcccgcttcagactcctcccagcccgccaccccgctgcccctctccgggcactcg gccctcagcattcaggagctggtagccatgtccccagagctggacacctacggcatcacc aagagggtcaaggaggtgctgaccgacaacaacctcggtcagcgcttgtttggggagacc atcctaggactcacccaaggctccgtctccgacctcctcgctcgcccaaagccctggcac aagctcagtctgaagggacgggagccctttgtccgcatgcagctgtggctgaatgacccc aacaacgtggagaagctgatggacatgaaacgcatggagaagaaagcctacatgaagcgg cggcacagctcggtcagcgacagccagccctgcgagcccccctccgctggcatcgactac agccagggcgccagcccccagccccagcaccagctgaagaaaccccgagtcgtgctggcc cctgaagagaaagaagctctgaaacgagcctatcagcaaaagccatacccgtcaccaaaa accatcgaagaactcgccacccagctcaacttgaaaaccagcaccgtcatcaactggttc cacaattacaggtctcggatccgcagagaactgttcattgaggagattcaggccgggagc cagggccaggccggggccagcgactcgccctcggcccggagcggccgggcagcgcccagc tcggagggcgacagctgcgacggcgtggaggccgccgagggcccgggccccgcggacgcc gaggagtcgggcggccccgcggccgccgccaagtctcagggagggccggccgaggcggcc gcggccccggaggagcgggaggaggcgccgcggccggcggagaaggcggagccgccgccc tccgggaccccgggcccggacgccaccgacgacgagggccggccccgggcgccgccgccg ccgccgcccccgccgccgccgccgccgccgccggagggccccgcggacggcccggggccc gtgccaaaccccgcggccgcgcccgcggccggggaggacgccgctacctcagccgccccg ccgggggagggcccctgcagggcccgggacggcgccgacaggagttccgctttgccaagc accagcgcgccggcggccgcccgcagggccagctcactgcagagcctcttcggcctcccc gaggcggcgggcgccagggactcgcgagacaaccccttgaggaagaagaaggccgcgaac ttgaacagcataatccaccgcctggagaaggccgccagccgggaggagcccatcgaatgg gagttctga

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