Sus scrofa (pig): 100624050
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Entry
100624050 CDS
T01009
Symbol
HDAC4
Name
(RefSeq) histone deacetylase 4 isoform X1
KO
K11406
histone deacetylase 4/5 [EC:
3.5.1.98
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04371
Apelin signaling pathway
ssc04613
Neutrophil extracellular trap formation
ssc05034
Alcoholism
ssc05203
Viral carcinogenesis
ssc05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
100624050 (HDAC4)
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
100624050 (HDAC4)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100624050 (HDAC4)
05203 Viral carcinogenesis
100624050 (HDAC4)
09165 Substance dependence
05034 Alcoholism
100624050 (HDAC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssc03036
]
100624050 (HDAC4)
Enzymes [BR:
ssc01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100624050 (HDAC4)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
100624050 (HDAC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Oxidored_nitro
Motif
Other DBs
NCBI-GeneID:
100624050
NCBI-ProteinID:
XP_020931554
Ensembl:
ENSSSCG00000024777
LinkDB
All DBs
Position
15:complement(138378237..138657266)
Genome browser
AA seq
1087 aa
AA seq
DB search
MSSQSHPDGLSGRDQPVELLSPARVNHMPSTVDVASALPLQVAPPAVPMDLRLDHQFPLP
VTEPGLREQQLQQELLALKQKQQLQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQELLA
MKHQQELLEHQRKLERHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVL
NKKKALAHRNLNHCMSSDPRYWYGKTQHSSLDQSSPPQSGVSASYNHPVLGMYDAKDDFP
LRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTDSACSSAPGSAP
SSPNNSSGSVSTENGIAPAVPSVPAETSLAHRLVTREGSVGPLPLYTSPSLPNITLGLPA
TGPSTAAGQQEAERLTLPALQQRIHLFPGTHLSPYLSAAPLDRDAGTAHNPLLQHMVLLE
QPAAQTPLVTDWYLAGLGALPLHAQSLVGADRVSPSIHKLRQHRPLGRTQSAPLPQNAQA
LQHLVIQQQHQQFLEKHKQQFQQQQLHLNKILPKPSEPARQPESHPEETEEELREHQALL
EEPFLDRLSGQKEVHALGVQVKQEPVESDDEEAEPPREAEPGQRQPREQELLFRQQAALL
EQQRIHQLRNYQASMEAAGVPVSFGGHRPLSRAQSSPASATFPMSVQEPPAKPRFTTGLV
YDTLMLKHQCACGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSE
AHALLYGTNPLNRQKLDSKKLLGSLTSVFVRLPCGGVGVDSDTIWSEVHSSGAARLAVGC
VVELAFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLHVSKTLVV
DWDVHHGNGTQQAFYSDPSVLYVSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGG
LDPPMGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLT
KQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSM
EKVIEIHSQYWRSLQRLASTVGYSLVEAQKCENEEAETVTAMASLSVGVKAPEKRPEEEP
MEEEPPL
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgagctcccagagccacccagatggactttctggccgagaccagccagtggagctgctg
agccctgcccgcgtgaaccacatgcccagcactgtggatgtggcctcggcgctgcctctg
caagtggctcccccggcggtgcccatggacctgcgcctggaccaccagttcccgctgccc
gtgacggagcccggcctccgggagcagcagctgcagcaggagctcctggccctgaagcag
aagcagcagctgcagaggcagatcctcattgccgagttccagaggcagcacgagcagctg
tcccggcagcatgaagcccagctccacgagcacatcaaacaacagcaagagctgctggcc
atgaagcaccagcaggagctgttggagcatcagcggaagctggagaggcaccgccaggag
caggagctggagaagcagcaccgggagcagaagctgcagcagctcaagaacaaggagaaa
ggcaaagagagtgccgtggccagcacggaagtgaagatgaagctacaagagtttgtcctc
aacaaaaagaaggcgctggcccaccggaacctgaaccactgcatgtccagcgacccccgc
tactggtacgggaagacacagcacagctccctggaccagagctccccgccccagagcggg
gtgtccgcctcctacaaccacccggtcctgggcatgtatgacgccaaagatgactttccg
ctcagaaagacagcttctgaacccaatctgaaattacgctccaggctaaagcagaaagtg
gccgagagacggagcagccctctgttacgcaggaaagatgggcctgtggttactgctcta
aaaaagcgtcccctggatgtcacagactccgcgtgcagcagcgccccgggctccgcgccc
agctcgcccaacaacagctccgggagcgtcagcacggagaacggcatcgcgcccgctgtg
cccagcgtcccggccgagaccagcttggctcacaggctcgtgactcgggaaggctccgtg
ggccccctccccctctacacgtccccgtctttgcccaacatcacgctggggcttcccgcc
accggcccttccacggcggcgggccagcaggaagccgagaggctcaccctccccgccctc
cagcagcgcatccacctcttccccggcacccacctctccccctacctgagcgcggctccc
ctggaccgggacgcggggacggcccacaaccctctcctgcagcacatggtcctcctggag
cagccggccgcgcagacacccctggtcacagactggtatcttgcaggcctgggagcgctg
cccctgcacgcgcagtccctggtgggggcggaccgcgtgtccccgtccatccacaagctg
cggcagcaccgcccgctggggcgcacgcagtcggcgccactgccccagaacgcgcaggcc
ctgcagcacctggtgatccagcagcagcaccagcagttcctggagaagcacaagcagcag
tttcagcagcagcagctgcacctcaacaagattctccccaagcccagcgagccggcccgg
cagcccgagagccaccctgaggagacagaggaggagctgcgggagcaccaggccctcctg
gaggagcccttcctggaccggctctcagggcagaaggaggtgcacgcactgggggtgcag
gtgaagcaggagcccgtcgagagtgacgacgaggaggccgagcccccgcgggaggcggaa
ccaggccagcggcagcccagggagcaggagctgctcttcagacagcaagccgccctcctg
gagcagcagcgcattcaccagctgaggaactaccaggcgtccatggaggccgccggcgtc
cccgtgtccttcggcggccaccggcctctgtcccgggcacagtcctcccccgcgtccgcc
accttccccatgtctgtgcaggagccccccgccaaaccaaggttcaccacaggtctcgtg
tacgacacgctgatgctgaagcaccagtgcgcctgcgggaacaccaacagccacccggag
catgctgggaggatccagagcatctggtccaggctgcaggagactggccttcgaggcaaa
tgtgagtgcatccgcggacgcaaggccaccctggaggagctgcagacagtgcattcggag
gcccacgccctgctctacggcacaaaccccctcaacaggcagaaactggacagtaagaaa
cttctaggctcgctcacgtcggtgtttgtcaggctgccctgcggtggtgtcggcgtagac
agcgacaccatatggagcgaggtgcactcgtcgggggccgcccggctggccgtgggctgc
gtggtggagctggccttcaaggtggccacaggggagctgaagaacggctttgctgtggtc
cgccctccgggacaccacgcggaggagagcacgcccatggggttctgctacttcaactcc
gtggccatcgccgccaagcttctccagcaaaggctgcacgtgagcaagaccctcgtagtg
gactgggacgtgcaccacgggaacgggacccagcaggccttctacagcgaccccagcgtg
ctctatgtctcgctgcaccgctacgacgacggcaacttcttcccgggcagcggggctcct
gacgaggtgggcacagggccaggcgtgggcttcaacgtcaacatggctttcacgggcggc
ctggacccccccatgggagacgccgagtacttggcggccttcagaactgtggtcatgccg
atcgccaacgagtttgccccagacgtggtgctggtgtcatcaggcttcgacgccgtggag
ggccaccccacgcctctcggcggctacaacctctctgccaaatgttttgggtacctgacg
aagcagctgatgggcttggccggcggccgggtggtcctggccctggaggggggtcacgac
ctcacagccatctgtgacgcctcggaggcctgcgtctctgctttgctgggaaacgagctt
gaccctctcccagaaaaggttttgcagcagagacccaacgccaacgccgtgcggtccatg
gagaaggtcattgaaatccacagccagtactggcgctccctgcagcgtctcgcctccacc
gtgggctactccctggtcgaggcccagaagtgcgagaacgaggaagccgagacggtcact
gccatggcctcgctgtctgtgggcgtcaaggcacccgagaagagacccgaggaggagccc
atggaagaggagccgcccctgtag
DBGET
integrated database retrieval system
