Sus scrofa (pig): 102157845
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Entry
102157845 CDS
T01009
Symbol
COL24A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XXIV) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04820
Cytoskeleton in muscle cells
ssc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102157845 (COL24A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102157845 (COL24A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
102157845 (COL24A1)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102157845 (COL24A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
102157845
NCBI-ProteinID:
XP_020946000
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All DBs
Position
4:129911760..130243177
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AA seq
1710 aa
AA seq
DB search
MGASPLQPAAFVAFPALPSVRHHGGLFASDVKLLLHVIVLCAPGVSVHAGGRGIDILHQL
GLGGKDVGHSSPVTAVPSPSTPSPQVVHVTNDSYVESPLRKVLPVSLAQPFTIIIGLQSR
KVNSAFLFSIRSKNRLQLGVQLLPKRLVVHLGGTQAVNFSHSVHDGRRHALAIAVSRRAV
SMFAECGGKSFRRETLADAQTFDSNSVFTLGSLSSDSARFEGVLCQLDIIPSVEAPANYC
RYVRRQCRPATSLLHSTIVPAEIPENSPLPKRSAAKPLSEDPFPAGKGGPDVTSSDSAAV
RKQRKHQPSGSQLTSHSGNVSAVGLMNHGIQTKEMIPEQLAQTNASLPVTHRSLSEARAK
STERLSSLPNASDDTAQRSDPAPALSPLKKVSPTRPHRKQDTPLRKAIAANLHTNELTEL
QRILNTTFYRRSEEPSAXSPPDLRKEGGLDPDAADPMDSSHETRQNDDCSDDEHLNAVLE
MENLRGPKGDPGPPGPPGPAGIPGPSGRRGPRGVPGPHGNPGLPGLPGPKGPKGDPGFSP
GQAISGEKGDQGLSGLGGPPGERGAKGPRGHPGLPGLRGEQGIPGFTGNIGSRGYPGRQG
LAGPEGNAGPKGARGFIGSPGEVGQLGPEGERGVPGIRGKRGIKGRQGFSGGVGGRGPAG
PDGSPGLVGSMGPPGFPGLRGSAGPLGPLGPSGVPGPEGLSGNKGLPGSKGDKGEQGIVG
EPGESGYPGDKGAVGFPGPRGARGKPGPSGQAGDPGPQGPSGLPGPEGFPGDIGVPGQNG
PEGSKGHIGNRGPPGPPGLKGAQGEEGPIGPLGELGLRGKPGPKGYAGEPGPEGLKGEAG
DQGNIGKIGDTGPVGLPGEVGVTGSIGEKGQRGSPGPVGPQGDKGAMGYPGPPGVPGPMG
PLGLPGRVGAGGPPGSPGPKGRRGPRGPEGLSGEQGVQGAKGEKGHQGKRGPHGLTGQTG
RPGERGLQGKPGLPGPPGSPGDRGPAGEPGPRGLQGDAGPPGEAGAEGPSGVEGEAGLQG
DPGAKGDAGPAGGVGVSGEPGLRGEPGAPGEEGLQGKDGLKGSPGGRGLPGEDGETGETG
LPGSVGPSGRPGQTNRPGPEGVVGIPGQRGRPGKKGDKGQLGPTGETGSRGALGPSGESG
LKGARGTRGAVGHLGLMGPTGEPGIPGFRGHEGQPGLSGLPGPKGEKGYPGEDSTALGPP
GPRGDPGPVGEQGERGEPGAEGYKGHVGVPGPRGAAGQQGPPGEPGEQGERGPRGERGSE
GPRGKKGAAGPSGRPGLPGLPGLPGPKGIRGHHGAEGVSGNPGKAGPPGKQGLPGEGGSP
GRAGPAGSPGPPGARGPTGPPGSPGGQGPQGERGLPGQPGSPGNRGHQGAQGGQGPRGEP
GAKGQTGEHGAQGLAGFQGFPGPKGPEGDAGGVGTPGPKGPSGQRGNTGSLGREGVTGPA
GRTGPRGEKGSRGETGPQGPRGKPGPPGPPGAPGPRKQMAVSAAIQASTDSHTALRMESY
QNTEVTLIDHSAEILKTLKYLSDLLRSIKSPLGTRDNPARICKDLLNCEHRVSDGKYWID
PNLGCPSDAIEVFCNFSAGGQTCLSPVSVTKLEFGVGRVQMNFLHLLSSEATHVITIHCL
NTPAWPSAQTSSAPTLGFKGWNGQIFEENSLLEPKVLSDDCKIQDGSWRKAKFLFHTQDP
NQLPVTEIQNLPHLKAKQKYHIESSSVCFL
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgggagcttcccccctccagccagcggcgtttgtggcgtttcctgctttgccgtctgtc
cgacaccacgggggcctttttgcttcagacgtgaaactgctgcttcatgttattgtgcta
tgtgcaccaggggtttctgttcatgcggggggacgaggcatagatattcttcatcaacta
ggccttggaggcaaagatgtaggacactcgtcaccagtgaccgctgtgccatcaccgtcc
acgccatctcctcaggtggtccatgtaacaaatgactcttacgttgagtcaccgctcagg
aaagttttaccggtcagcctagcgcagccatttacaataataattgggttacagtcccgt
aaagtcaacagtgcatttctcttcagcattcgaagcaaaaacaggctgcagctgggagta
cagctgttacctaagaggttagtggtgcacctcggaggaacgcaggctgtgaacttcagc
cacagcgttcacgacgggcggcggcacgcgctggccattgccgtcagccgtcgggccgtc
tctatgtttgctgagtgcggagggaagtcctttcgcagagagactcttgcggacgctcag
accttcgattccaacagtgtgtttaccttaggaagtctgagcagtgactccgcccgtttt
gaaggagtgctatgtcagctggatattattccttccgtagaagcacctgcaaactactgc
agatatgtgagacggcagtgtcgccccgccacaagccttcttcacagcaccattgtacca
gctgagataccagaaaactccccgctgcccaaaagatctgctgccaagcccctgtcagag
gacccatttcctgcaggcaagggtggtcctgatgtcacctccagtgactctgcagcggtg
cgtaaacagcgaaaacaccagccatcagggtctcagctcacttctcattcggggaatgtc
tctgctgtgggtcttatgaatcatgggattcagaccaaagaaatgattcctgagcaactt
gctcagacgaatgcaagcctgccagtgacccatcgcagcctcagtgaggcgagagcaaag
agcacggagagactgagttctcttcccaatgcgtcggacgacaccgcacagcgcagcgat
cccgcacctgctctgtcaccattgaagaaggtgtcacctactcgtccacacaggaaacaa
gacacacctctcaggaaggcgattgcagcaaatctacatactaatgagctcacggaactg
caacggattttaaacacaaccttttaccgcaggtctgaggagccgtctgcgngcagtccc
ccggatctaaggaaggaaggtggattggaccctgatgccgctgaccccatggacagcagc
cacgaaaccaggcagaacgatgactgttctgacgatgagcatctgaacgcagtgcttgaa
atggagaatctaagagggccaaaaggggaccctggacctcccggtccccccggcccagca
ggcatcccaggcccatcgggaaggagaggtccacggggcgtaccggggccacatggaaat
cctgggttacctggactgccaggtccaaagggccccaaaggagatccgggtttttcccca
ggtcaagccatttctggagaaaagggggaccaaggcctttccggactcggggggccgccg
ggcgagcggggcgccaaggggcccagaggacacccggggcttccagggctccgaggcgaa
cagggaattccaggattcactggtaatattggttcacgtggttaccctggcaggcagggt
ttagctggacccgaaggtaatgcaggacccaagggcgcccgcggtttcattggctctcct
ggagaagtaggacagctgggacctgaaggagaaagaggtgtccctgggatccgtggaaag
aggggcattaagggaagacaggggttttcaggtggcgttggcggcagaggcccagccggt
cctgatggcagccctggacttgtaggtagcatgggtcctccaggattccctgggcttaga
ggcagcgctggtcctctgggaccccttggaccttctggagtccctggccccgagggtctt
tcagggaataagggcctacctggaagcaaaggtgataagggtgaacaaggcatcgtggga
gagcccggagagtcaggatatcctggagacaagggcgcggtgggcttcccaggaccacga
ggcgccagaggaaagccaggaccttcgggccaagcaggcgacccaggaccccagggacca
tctggccttccaggaccagagggttttccaggagatatcggggttcctggacagaacggt
cctgaaggatcaaagggacacattggaaatagagggcctcctgggcctcctggtctcaaa
ggagctcagggagaagaaggacccattggaccccttggagaactggggctaagaggaaaa
cccggtccaaaggggtatgcaggtgagcctggaccagaaggcctgaagggggaagcaggg
gaccaaggaaacatcggaaaaattggtgacacaggacctgttggcttacctggagaagtt
ggggtgactggcagcattggcgaaaagggacagcgaggaagtccaggcccagtaggtccc
cagggagacaagggtgctatgggctatccgggtcctcctggggttccaggacccatgggt
ccactgggattacctggtcgtgttggggcaggaggtccgcctgggagtccaggtccgaaa
ggacggagaggaccaagaggacccgagggtctctcaggagaacaaggtgtccagggcgcc
aagggtgaaaaaggccatcaaggaaaaagagggccgcacgggctgacgggccagaccgga
cgccctggagagagaggcctccaggggaagccgggtttgcctggaccccccgggagtccc
ggagacaggggacctgcaggagaaccgggccctcgaggactgcaaggtgatgcgggacca
cctggagaggcgggtgctgagggaccttcaggtgtggagggagaagccggtctgcagggc
gatccgggtgcaaagggagatgctggacctgcaggcggtgttggagtttccggggagcca
gggttacggggtgaaccaggagctcctggggaagaaggcctccaaggaaaagatggattg
aaggggagcccaggaggaaggggactgcctggagaggatggagaaaccggcgagacgggg
ctgccagggagtgtggggccctcgggccgaccagggcagaccaacagaccaggacctgaa
ggagttgtgggaattccaggacaaagaggccgtcccggaaaaaagggtgacaaaggacag
ctggggcccacgggagaaactggaagccgaggggccctgggaccaagtggagaaagcggt
ctgaaaggcgccagaggcactagaggtgccgtgggacatttaggattgatgggacctact
ggagaaccagggattccaggatttaggggccatgaaggtcaaccgggactttctgggttg
ccaggacctaaaggagaaaagggttatccgggagaagatagcaccgccctaggaccacct
gggcctcgaggtgacccaggtccagtgggggaacaaggagagagaggagagcctggagca
gaaggctataagggccatgtgggagtgccaggaccaagaggggccgctggacagcaaggg
cccccaggtgagccgggtgagcagggcgagcgaggaccccgcggagagagaggatctgaa
ggtcctcgggggaagaagggcgctgccggtccttccgggagacctgggcttcctggactt
ccaggcctgcctgggccgaaaggcattcgaggacaccatggagcagaaggcgtttcaggg
aatcctggaaaagctgggccaccaggaaaacagggacttcctggcgaaggaggcagcccg
ggaagagcgggaccggctgggtctccaggtcctccaggagccagagggcccacaggccca
ccaggaagccccggaggccagggcccgcagggtgaacgcgggctgcctgggcaacctgga
agtccaggtaatcgagggcaccaaggagcacaaggcggccaaggaccacgcggcgagcct
ggcgcgaaagggcagaccggcgaacacggcgctcaaggtctggcaggcttccaaggattc
ccaggccccaaaggtcctgagggagatgccggcggtgttggaacaccaggtcctaagggc
ccttctggacagagaggaaacactggatcccttggcagagaaggtgtaacaggcccggcg
ggtagaactggacccagaggtgaaaaaggctctagaggtgaaacgggcccccagggacca
agaggaaaaccagggcctcccggtccacctggagcaccgggcccaagaaaacaaatggct
gtcagtgctgctattcaagcctcgactgactcacatactgccctacggatggagagctac
cagaataccgaagtgactttaattgaccacagtgcagagatactcaaaaccttgaaatac
cttagcgatttactgcgcagcatcaagagtcctcttggcactcgagataacccagcacga
atctgcaaagatctgctcaactgtgaacacagagtatcagatggaaaatactggattgat
ccaaatcttggatgcccttcagatgccattgaggttttctgcaatttcagtgctggtggt
cagacgtgtttatctccggtttcggtgacaaagttggagtttggagttggaagagtccag
atgaacttccttcatttactgagctcagaagccacccacgtcatcaccattcactgtcta
aacactcctgcgtggccaagtgctcagacgagctcagcaccgactcttggtttcaaggga
tggaatggccagatttttgaagaaaactctctccttgaacccaaagtgctttcagatgac
tgcaagattcaagacggcagctggcgtaaggcaaaattcctttttcacacccaggaccct
aaccaacttccagtaactgaaatacaaaatcttcctcatctcaaagccaaacagaagtac
cacattgaaagcagttctgtatgctttctctga
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integrated database retrieval system
