Sus scrofa (pig): 106508513
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Entry
106508513 CDS
T01009
Symbol
PKD1L2
Name
(RefSeq) LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssc04040
]
106508513 (PKD1L2)
Ion channels [BR:
ssc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
106508513 (PKD1L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Gal_Lectin
Lectin_C
Ion_trans
REJ
GPS
Motif
Other DBs
NCBI-GeneID:
106508513
NCBI-ProteinID:
XP_020952656
LinkDB
All DBs
Position
6:7065143..7166620
Genome browser
AA seq
2494 aa
AA seq
DB search
MSALTLILVGFALRFRAITAKPEHDNSCSENQVGFRDACYEFVPLGRTFYGAQSWCEGQG
GHLVFIRDESTQQFLQKHISQDREWWIGLTGNLAQKATTQGPAIWLDTSNVSYSHWRQGQ
DASAPKLCGYMGRDTSFGWVASDNCTQEFAFICEFGVGQTLACEGLNATMHCGSGDVIQI
QDAFYGRQTPHYCTKDAGHPSYLEEACSWVSVKDEVAGQCQGLQACQVAADGTYFGDLCP
GRGSYLWVQHQCREGLHLTVSNESFTFDNVTVSLTWLLSPYIGNLSCIINMGDGHTFDPY
YPPSLSSSVSHQFTAPGEFTVFAECTTSEWHVTAQKQVTMRDRMERLRVTGCSGLCTSGT
SPLCQAVFGDPLWIQVELDGGTGVTYTVLSGNTSLAEFTTQRGPLPCNLTLDRTVQQQTG
PGMHQLEIRATSNTTASAPSRNITVHFVEPLSGLQASWASDHLELGQDLLVNVSVAHGIP
EGLTFEVAGLGATFSHEEESLGGPFGTYRVAVPREGTFLVTVLVRNAFSNLSLEIGSITV
TGKNFLQGREICDLEFRTLRDKGAELYVEPGRYLDPFTTVTLGWPDSDKDLRFQWSCAPS
QKVATSVKFKVPEWITVLAPLSFSGRCWAQWIDCVERQLLHIDQRELVVPSSCLPPPDSA
VTLRLEVWRGQELENLEEECLYISAPLQLRPRVSCEKNCGPVNAGGDVRLKVTLGDDSAA
AVFSWYLDETPLEKAEPLPEACRLRGFWPRSLLLLERNTSTLLLKGSFLKTRGQAARIRV
TAVAGHAYGEDTFVISSLPPPEAPTCTIAPQEGTVLTSFAIFCNASAAPGPLEYCFCLES
GSCLYCGPDSALPSVYLPLGKESNDFVLTVVISVSNREGDRQQTHAVVKVGREDTRVEDE
AFQAAVWDTVTAALQGGQGPEQLFQLARSVSSLLDQQCQGPGSGRPQRVDARQKVRERIL
GSLAVASATLGDMPRVQELAEVLKEVTQRSEELTPSAQREASWALQHASEALLAVSAKAH
PEDQRRQAATRDLFQAVGSVLEASLRDRAEEPAKANGSQTVTVSQLLRAVERVQDTLLLG
RLPGGLPTTLATPSISVYTNRILPQGWRGSSVHVAAASSATFTLPAAPSLGSMEDSREPV
DIRMMSFPKSPFPARSPLDVSGTIGGLSLTSPSGQLIPVKNLSENIEILLPQLSEGHGKP
TVLNLTSPEALRVNLTSRGVALGIQLHWRPDIPLMLSLGYGYHPNETSYDAKAHFPPMAA
SDGLSTWILSPDDLYFGEGIYYLAVIPESDLEPAPGRDLSVGITTFLSHCVFWDEVQGTW
DNSGCQVGPRTTPXQTHCLCNHLTFFGSTFLVMPNAVDIRQTADLFATFEDNPVVVTTVG
CLCVAYVLVVIWARRKDAQDQAKVKVTVLEDNDPFAEYHYLVTVYTGHRRGAATSSKVTV
TLYGLDGESEPHHLSDPDIPVFERGGVDVFLLSTLFPLGELRSLRLWHDNSGDRPSWYVS
RVLVHDLAMDRKWYFLCNSWLSIDIGDCVLDKIFPVATEQDRKQFSHLFFMKTSMGFQDG
HIWYSIFSSSARSNFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMDLGKIEFTWQ
EAMIGLESSLLMFPINLLIVQIFRNTRPRRTKKQSTGRWAGGPLGPAPSLQPMEDGLPTL
EAVTKDLWRLVSSLFKALKVPPPGSCWDSGDSMDINQLLALVEDVVCRQHKPGQVFWEEA
GQRGSPLTHALGSAQAKGRSQCSTPKVGPSEAWKDLAYRQCLYLQLEHVEQELLLVGTRG
YSQCQSHTQALRQLQTLKAXLGEQAGTLSPKHTSSLQASKPPRGLPWWCVLVGWLLVAAT
SGVSAFFTMLYGLHYGRASSLKWLISMAVSFVESVFVTQPLKVLGFAAFFALVLKRVEDE
EEPVAPLPGRLSSPDAAALFRARRKSRRDSYQPPLASDIERMKATRLKEQKAFALIREIL
AYVGFLWMLLLVAYGQRDPSAYHLNRHLEHSFTQGLSAVLGFQEFFTWANTTLLSNLYGH
HPGFITDGNSKLVGSAQIRQVRVQESSCPLAQQLQASLDGCRAPYSLDVEDLSDYGEGWN
ASIFNKSNGFPQAWQYRSQSQRRGHPIWGKLTVYRGGGYVVPLGTDRQSASRTLQYLFDN
TWLDSLTRAAFVEFTVYNANVNLFCIVTLTLETSALGTFFAHAHLQSLRLYPFTDGWHPF
VVAAEIVYFLFLLYYMIVQGKLMRKQKWCYFCSKWNLLELAIILASWSALALFVKRAILA
ERDIQHYRKHREEGISFSETAAADAVLGYIIAFLVLLSTVKLWHLLRLNPKMNMITSALR
RAWGDISGFIIIILIMLLAYSTASNLIFGWKLRSYKTLFDAAETMISLQLGIFNYEEVLD
YSPVLGSFLIGSCIIFMTFVVLNLFISVILVAFNEEQKYYQLSEEGEIVDVLLMKILSFL
GIKCKGQVPRSSSEQAERLSEAWPPQLESSVPQV
NT seq
7485 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccttgaccttgatcctcgtggggtttgctctgaggtttagggccatcactgct
aagccagagcatgacaattcctgctctgagaaccaagtgggtttcagagatgcttgctat
gaatttgtgcctctcggccgcaccttctatggtgcccagagctggtgtgagggccaagga
ggccatttggtctttattcgtgatgaaagcacccagcaatttctgcagaagcacatttcc
caagacagggaatggtggatcggactcacagggaatttggctcagaaggcaaccacgcaa
gggcccgcgatctggctggacacctcaaacgtgagctacagccactggcgccaagggcag
gatgcttctgctcccaagctctgcggctacatggggagagacacttcctttgggtgggtg
gcctcggacaactgcacacaggagttcgccttcatctgcgagtttggtgtcggtcagacc
ctggcctgcgagggcctcaatgcgaccatgcactgcggctcgggggatgtcatccagatc
caggatgctttctatggccgccagactccccattattgcactaaggacgccgggcacccc
tcatacctggaggaggcatgcagctgggtcagcgtcaaggatgaagtggcaggccagtgc
caggggctgcaggcctgccaggtggcagcagatgggacctactttggagacctgtgtccc
ggccggggcagctacctgtgggtgcagcaccagtgccgggaaggcctgcatctaacggtg
tccaatgagagtttcacctttgacaacgtcaccgtctccctgacatggctcctctctcct
tacatcggaaacctgtcctgtatcatcaatatgggagatggccacacttttgacccctac
tatcctcccagcttgtccagcagcgtgagccaccagttcacagcccctggggaattcacc
gtgttcgctgagtgtacgaccagtgagtggcacgtgacggctcagaagcaagtgacgatg
cgagacagaatggagaggctccgtgtgactgggtgctctggtctgtgcacgtcaggcacc
agccctctgtgccaggcagtcttcggggaccctctgtggattcaggtggagcttgatgga
ggaacaggggtgacctacactgtgctgtcgggtaacacctccctggcggagttcaccacg
cagaggggcccgctcccctgcaatctgaccctggacagaacagtccagcaacagacaggc
cctgggatgcaccagttagagatccgagccaccagcaacaccaccgcctctgccccctcc
agaaacatcaccgtccacttcgtggagcctctgtcagggctgcaggcctcttgggcttct
gaccacttggagcttggacaggacctactggtcaatgtctcggtggctcacggcatccca
gagggactgacctttgaggtggcaggacttggtgccaccttttcccatgaggaagagagc
cttggagggccatttgggacttaccgcgtggcagttcctcgtgaaggcacctttctggtc
actgtgctggtgaggaatgcattctcaaacttgagtttggaaattggaagcatcactgtc
acaggtaagaattttctgcaagggagggaaatttgtgacctggagtttaggacactgaga
gataaaggtgcggagctgtacgtggagcctggccggtacctggatcctttcacaacagtg
actctgggctggcccgacagtgacaaggacttacgcttccagtggtcatgtgccccaagc
cagaaggtagccacaagtgtcaagttcaaggttcctgagtggatcacggtattggccccc
ctctctttctcagggcgttgctgggctcagtggatcgactgtgttgagaggcagctgctc
cacatagaccagagggagctggtggttccgtcatcctgcctgccaccgcctgactctgcc
gttaccctgcgtctggaggtctggagaggccaggagctggagaacctggaggaggagtgc
ctctacatatccgcgcccctgcaacttaggccaagagtcagctgtgagaagaactgcggg
cccgtgaatgccggcggagacgtcaggctcaaggtcaccctgggagacgactctgcagca
gccgtgttcagctggtatttagatgaaaccccgctggagaaggctgagccactcccggag
gcctgcagactccgaggattctggccgcgttctttacttctccttgagagaaacacctcc
actctgctgttgaaaggctccttcctgaagacccggggccaggccgcccgaatcagagtc
acagctgtggccgggcacgcctatggggaggacacctttgtgatcagctccctgcctcct
ccggaggcgcctacctgcaccattgccccacaggagggcaccgttctgacgagcttcgcc
atcttctgcaacgcctccgccgccccgggccccctggagtactgcttctgtctggaatca
ggttcctgtctgtactgtggtcctgactctgccctcccatcagtctacctgccacttgga
aaagaaagcaatgactttgtgctgacggtggtcatctccgtctccaaccgcgagggggac
agacagcagacccacgcagtggtgaaggtggggcgtgaggacacccgtgtggaggatgag
gcattccaggctgcagtgtgggacacggtcactgctgctctgcagggcgggcagggccct
gagcagctcttccagctggccagatccgtatcatccctgctggaccagcagtgccagggg
ccaggctccgggcggccgcagagagtggatgccagacagaaggtcagggagcgtatcctg
gggtcactggctgtggccagtgccacgctgggggacatgccgagggtgcaggagctggct
gaggtgctgaaagaggtgactcagcgcagtgaggagctcacgccctcggctcagcgggag
gccagctgggctctgcagcacgccagtgaggccctgttggccgtgagtgccaaggcccat
cctgaggaccagaggcgccaggcggctaccagggacctgtttcaggctgtaggcagtgtg
ctggaagcatctctgagggacagagcagaagagcccgcaaaggctaacggcagccagaca
gtcacagtgtcccagctgctcagagccgtggaacgtgtccaggataccctcctgctgggg
agactgcccgggggccttccaaccacactggccacaccctccatctccgtgtatacaaac
agaatactgccgcagggttggcgaggctcctccgtgcacgttgctgcagccagctctgcg
accttcaccctgcccgctgccccctccctcggctccatggaagatagtcgggagcctgtg
gacataaggatgatgagtttcccaaaaagcccctttccagcccgaagtccccttgatgtc
agtggaactattggtggcctctctctgaccagccccagtggacagctcatccctgtgaag
aacctatcagagaacatcgagattctgctgcctcagctttctgaaggacacggcaagcca
accgtgttgaacctgaccagccctgaagctttgcgggtgaacctgacttcaaggggagtg
gctttggggatccagctgcactggaggcctgacataccactcatgctcagcctgggctat
ggctaccaccccaatgagaccagctatgacgccaaagctcacttcccgccgatggctgct
tcagacgggctgtccacatggatcctgagcccagatgacctatattttggagaaggcatc
tactatctggctgtgatccctgagtctgacctggagccagcccctggcagggacctctca
gtcggcatcaccaccttcttgtcccattgtgtgttctgggatgaggtccaggggacttgg
gacaactctggctgccaggtggggccacggaccacccctncccagacccactgcctctgc
aaccacctcaccttctttggaagcacgttcctggtgatgcccaatgccgttgacatccgc
cagaccgctgacctctttgccacctttgaagacaaccctgtggtcgtgaccaccgtgggc
tgcctctgcgtggcctatgtgctggtggtgatctgggcgcggaggaaggatgctcaggat
caggccaaggtgaaggtcacagtgctggaagacaacgatccctttgccgagtaccactac
ctggtgacagtctataccggacaccggaggggcgcagccacatcctcaaaggtgactgtc
accctatatggtctggatggagagagtgagccccaccacctgtcagaccctgacatcccg
gtttttgagcgaggaggagtggacgtcttcttactctccaccctgtttcccctgggggag
ctgaggagcctgcggctgtggcatgacaattcaggggacaggccatcctggtatgtgagc
cgggtgctggtgcatgacctggccatggaccggaagtggtacttcctctgcaactcatgg
ctgtccattgacatcggagactgtgtcctcgacaagatatttccggtggccacagagcag
gacaggaaacaattcagccacctgtttttcatgaagacctccatgggcttccaggatggc
cacatttggtattccatcttcagcagctcagctcggagcaacttcacccgtgtccagagg
gtgtcctgctgcttctccctgctgctctgcaccatgctgaccagcatcatgttctggggt
gtccccaaggacccggctgagcagaagatggacttgggtaaaatcgagttcacctggcag
gaagcaatgattgggctggagagctctctcctcatgttccccatcaacctcctgatcgtt
caaatctttcggaacacccggccccggagaaccaagaagcagagcactgggagatgggct
ggggggcccctcggcccggccccctcactacagcccatggaggatggccttccgacgctg
gaagcagtgaccaaggatttgtggagactcgtcagctccttgttcaaagctctgaaggtg
ccacctcctggctcctgctgggactccggggactcgatggacatcaaccaactgctggcc
ttggtggaagacgttgtttgtcggcagcacaagccagggcaggtgttctgggaggaagct
ggacagagagggagccctttaacacatgctcttgggtctgcacaagcaaaaggtaggtcg
caatgttccacgcccaaggtgggcccaagtgaggcttggaaggaccttgcctacaggcag
tgtctctaccttcagctggagcacgtggaacaggagctgctgctggtggggacccggggc
tactcccagtgtcagagccacacccaggcgctgaggcaattgcagaccctgaaggctnac
ctgggggaacaggctggaactctatccccaaaacacaccagctccctgcaggcaagcaag
ccccctcgaggcctgccctggtggtgtgtcctggtgggctggctcctggtggcggccacc
agcggagtgtcagccttcttcaccatgctctatggcctgcactatggacgggccagctcc
ctcaagtggctcatctccatggctgtctcctttgtggagagtgtgtttgtcacccagccc
ttgaaggtgctgggatttgctgctttctttgcactggtcctgaagagagtggaggacgag
gaggagcctgtggccccccttccaggacgtctctccagcccagacgctgccgccttgttc
cgagcacgaagaaagagcagaagggacagctaccagccgcctctggcctctgacatcgag
aggatgaaagccacccgcctcaaggaacagaaggcatttgccttgatcagagaaatcttg
gcctacgtgggcttcttgtggatgctgctgctggtggcctatgggcagagggaccccagc
gcctatcacctcaacagacacctcgagcacagcttcacccaaggcctttcagctgtgctg
ggcttccaggaattcttcacgtgggccaacaccacgctcctgagcaacctgtacggtcat
cacccaggatttatcactgatgggaactccaagctggttggcagtgcccagattcgccaa
gtgagggtccaggaaagctcttgccctcttgcccagcagctgcaggcttctcttgatgga
tgccgtgcgccatattccctggatgtcgaagacttgtcagactatggggaaggctggaat
gcatccatcttcaataagagcaatggctttccccaggcttggcagtacaggagccagagc
cagcgccgagggcatcccatctggggcaaactcactgtgtaccggggaggaggttacgtg
gtccccttggggacggatcgccaaagtgcctctagaactctccagtacctctttgacaac
acctggctggacagcctgaccagagccgcgtttgtggagttcacggtctacaacgccaac
gtcaacctgttctgcatcgtcactctgaccctggagaccagtgccctgggaaccttcttt
gcgcacgcgcacctgcagagcctgcgcctgtaccccttcacagacggctggcaccccttt
gtagtagcggcagagattgtctacttcctgttcctcctctactacatgatcgtgcagggc
aagctcatgaggaagcaaaagtggtgttatttctgcagcaagtggaaccttctggagttg
gctatcatcctggccagctggagtgccctggcactgtttgtcaagagagccatcctggcg
gagcgtgacatccagcactaccggaaacacagagaggagggcatcagtttcagtgagaca
gcagcagccgatgcggtccttggctacatcattgccttcctggtactcctgtccacagtg
aagctttggcatctgctcaggctgaaccccaaaatgaacatgatcacatcagccctgcgt
cgtgcctggggggacatttcaggctttatcatcatcatccttatcatgctcctggcttac
tccactgcatcaaacttaatatttggttggaaactccgttcctacaaaaccctctttgat
gcggcagaaacgatgatcagccttcagctaggaatcttcaactatgaggaggtcctggac
tatagcccagtgcttggctctttcctaattgggtcctgcatcattttcatgacatttgtg
gtgctgaatctgtttatctctgtcatcctagtggctttcaacgaggagcaaaaatactat
cagctgtcggaggaaggcgagatcgtcgatgtgctactgatgaagatactcagtttcctg
ggcattaagtgtaaagggcaggtgcccagaagcagcagtgagcaggctgagcggctgtca
gaggcctggccccctcaactggaatcatctgtgccccaagtttaa
DBGET
integrated database retrieval system
