Syngnathus scovelli (Gulf pipefish): 125969074
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Entry
125969074 CDS
T08785
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125969074
NCBI-ProteinID:
XP_049576717
LinkDB
All DBs
Position
Unknown
AA seq
1581 aa
AA seq
DB search
MSSGAGLRSGFGSSGMSSGFVTVEDKREGSPGTVTFTKVSKTYSADGFGNSTRGSTSTVA
SSPILKERKIMTTMAASHSDVFDGSTSTDSSPEYSRNEFGSSKAMSGSTPRGRSQSRESA
IRARLQSASDSASWTELDDVKRLLKGSQSESTTTVQSPNNSLPIPKKASVETRTISETTS
TIKCSNNSLPIPKKASVETRTISESTSTIQSPNHSLVIPKNTSGDTRIVSESISTIHSPN
SLLTIPKITSVETRMGTEKSKSGLLTGPDHFGGIWPGSVNSSYSFNPNPNNLTTTSTVYH
SGGSRGGKGDVGGGVRNNMVLSSPTVHSGLSVSSTVPVYGVQNNLISTNTSPAVFSPAGT
NTDTVYGVQKNVSSPAISTTKVRPRSPSIDEPLDKDFTFAMVEKDKTPIKKETERLVTTK
DTGKQFVSTAPATSSMSTAAYSDDSLMREKHKFSMSTMNDERNAKATYSDDSLMSEKYKF
SMGTMNDERDAKAALLKYGSKDKTGCADICNDGSCFGLSRCCRCSWWKWLLGILLGLLLL
LGLLFGLIALSEEVKRLKKRVEAVEAITGTTSARTSRLSGSSAINIADPLDSKYSDRSYS
GSTLTHSDNGIGLGTAARGSGEDLQRTVQQLVRAELRSDGLRDSLKGAKGDPGMKGDPGV
LGLQGDPGFPGLPGPPGRAGNPGTEGPRGSKGNIGDPGPQGFPGQKGLDGLLGPRGEAGP
PGFGSKGEKGNPGPVGAPGQVGQRGAPGLKGSQGDSGYPGQKGTPGLPGTKGGLGQRGPS
GPAGEPGKEGQKGSKGTAGVPGIPGQPGAKGERGTAGQVISAAGSSTVAIPGPPGPTGPP
GPAGVPGLSGPMGQNGNPGPKGDRGEKGDRGERGEAGVSVSRSETISSTRTGTLSSSAGL
RGPPGPPGPPGAPGAPGEGREGPTGRRGPPGEPGIAVPGPAGPKGEPGNFQPSSGTFFAG
PPGPPGPPGPQGPQGERGLRGYQGEPGQPGLAGIPGGSGGSGFSGVSLAGSSRRGLPGPP
GPPGPPGPPGRGWSASGSSEMGQYIAEYIQSGNLKQYLVGPPGPPGPPGFSAASGAVMVD
DVANRVIAYMQSQGRGYGGTSGSLGLGVQSGSMSVDDLIALLQREEVRRYVAGPPGPPGP
PGAPGQGSYRFSMQEVAERVISLMKERGMVGASGQGNGFSSAVGPQGPPGVPGPPGPPGA
SGTGNYLSSDVREYLQSIAGRGPPGPPGPPGPMGPPGTSTELTYIGGANGETITADRREY
VSSGRTRGGMFGIPGPPGPPGPPGEKGDSGVSGGRHWNVETGDYSSMAVGITDYIKSHGL
LRDVVQGGAVQGPPGPPGPPGYSQWFGSQDNAVDIVEYIKSQGLLYDSGRDQYGRSGQGL
RGPPGPPGSTRWYGSQGNATDLVEYIRSHGVLRDIIREYSSHIHQGPPGPPGPPGQSQGF
GSSGNYTHLVEYLQSRGLIGDRRWNNYEHSVQGPPGLPGPPGAPGYSRVFGSQANVTDLV
EFIRTNGAIVGAPGRPGQKGEIGFPGPKGDRVQILALAKLPLHSAGVGSNIPVTIVRISS
LEDVGSNIPATIVKISSLEDE
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaggggcgggtttacgctctgggttcgggtcatccggcatgtcttcggggttt
gtgacggttgaagataagagagaagggagtcctggtactgtcacctttacaaaggtgtcc
aaaacctacagtgccgatggatttgggaattcaacaagaggttcaacatcgacagttgcc
tcgtctcctattttgaaggagaggaagatcatgaccacaatggcagcaagtcattctgat
gtttttgatgggagtacaagtacagactcatctccagagtattccaggaacgagtttggc
tcctcaaaggcaatgtcaggttccaccccacgagggagatctcagagtcgagagagtgcg
atccgagccaggcttcagagcgcttctgattcagcaagttggactgaactggatgacgtg
aagcgtctgctgaaaggaagtcagtctgagagcaccaccaccgttcagtccccaaacaac
tctttgcccattccaaagaaggccagcgtggaaacaagaaccatatctgagaccaccagc
accattaagtgttcaaacaactcattgcccattcccaagaaggccagtgtggaaactaga
accatttctgagagcacgagcaccattcagtctcctaaccactcgttggtcatacccaaa
aataccagtggggacacaaggattgtgtctgagagtatcagcactattcattccccaaac
agcttattgactatccccaagatcactagtgtggagacccggatggggacggagaagtca
aaatcaggtctgttgacaggcccagatcactttggtggtatttggcctggaagtgttaac
agcagctacagcttcaatccaaaccccaacaacctaaccaccacatctactgtttaccac
tcaggcggaagtcgaggtggaaaaggagatgtcggagggggtgttcgcaacaatatggtc
ctaagctctcccactgtacacagtggcctatccgtcagcagcaccgtgccagtgtatggt
gttcagaataacctgatcagtaccaataccagccctgctgtcttctctccagctggaaca
aacactgacacagtttatggtgtgcagaaaaatgtctctagccctgcaatcagtacaacc
aaagtgcgtccccgcagtccttctattgatgagcctttggacaaagattttacatttgcg
atggtagaaaaggacaaaacacctatcaagaaggagacagagcgactggtcacgaccaaa
gacactggcaaacaattcgtgtctactgctcctgcaacttcttcaatgtctactgctgcc
tactctgatgattcattgatgagggagaaacacaagttttcaatgagcacaatgaatgat
gaaaggaatgctaaagctacctactctgatgattcattgatgagtgagaaatacaagttt
tcaatgggcacaatgaatgatgaaagggatgccaaagctgcacttctgaaatacggctca
aaagataaaactggctgcgcagatatatgcaatgacggctcatgttttggcttgagccgc
tgctgtcgctgcagttggtggaagtggctgctgggtatcctgctcggcctgctccttctt
cttggtctcctcttcgggctcatcgctttgagtgaggaagtgaaacgtctcaagaagcga
gttgaagctgtagaagccatcaccggcactacgtcagcgaggacgagtcgtctctccggc
tcctctgccatcaacattgctgatccgctggattctaaatactccgacaggagttattct
ggttccacgctgactcactctgataacggaattggtttagggactgcagcacgtggatcg
ggagaggatttgcaaagaactgttcagcagttggtcagagccgaattacgctctgatggt
ttaagagactcgctgaaaggagctaaaggagaccctggaatgaaaggtgatccaggtgtt
cttgggcttcaaggtgatcctgggtttcctggcctaccaggtcctcctggacgagcgggc
aacccaggaacagaagggcccaggggttcaaagggaaacataggtgatccaggccctcag
ggatttccaggtcagaagggcttggacgggctgctgggccctcgcggagaagcagggcct
ccaggttttggctcaaaaggagagaaaggcaatccgggacccgttggtgctcctggacaa
gtgggacagagaggtgctcctggtctcaagggttcccagggtgatagtggatatcctgga
caaaaaggaacaccaggcttaccaggaaccaaaggaggcttgggacagaggggaccgagt
ggccctgcaggtgaacctggaaaagagggacaaaagggctccaagggaactgcaggtgtt
cctggaataccaggacagcctggtgcaaaaggtgaaaggggtacagctggtcaagtcatt
tctgcagctggctccagtacggtggcaatcccgggaccaccaggaccaactggacctcca
ggtcctgctggagttcctggtttgtctggtcccatgggtcaaaatggaaatcctggtcca
aaaggagaccgtggagagaaaggtgacagaggtgagagaggagaagctggcgtcagtgtc
tcaagatcagaaactatcagttcaacacgaaccggtactctgtcatcatcggctggactt
aggggcccaccgggacctccagggcctcctggagccccaggtgctcctggtgagggaaga
gaaggtcctactgggcgtagaggtccacctggagagccaggtattgcagtacctggacct
gcagggccaaaaggagagcctggcaactttcaaccttcatctggaaccttctttgctgga
cctccaggaccaccaggacctcctggaccccagggcccacagggtgagcgaggactcaga
ggttaccaaggagaaccaggtcagccagggttggcaggaattccaggcggatcaggtggt
tcaggattctctggagtctcccttgcgggctcatcaagacgaggattacctggacctcct
ggacctcctggaccacctggtccacctggaagaggttggagtgcatcaggatcaagtgaa
atgggccagtacattgcagagtacattcagagtggaaaccttaagcagtatttggtgggg
cctccggggcctccagggcctccagggttctcagcggcttcaggtgccgtgatggtagat
gatgtagcaaaccgagttattgcctacatgcagagtcagggcagaggatatggcgggact
tccggctcgcttggtctgggtgttcaaagtggctccatgtctgtcgatgacctcattgcc
cttttacagcgagaagaggtgagaaggtatgttgctggtccacctggcccaccagggccc
cctggagcaccaggtcaaggaagttatagatttagcatgcaggaagtggctgaacgtgtc
atcagtttgatgaaagagaggggcatggttggtgcatctggacaaggaaatggcttctcg
agtgctgttggaccccaggggccacctggtgtgccaggtccacctggacctcctggagca
tcaggaactgggaactacttgagctcagacgttcgtgaatatttgcaaagtatcgccggt
agaggtcctccaggtccaccagggccccctggacccatgggtccacctgggacaagcact
gaacttacctacattggtggtgcgaacggcgagacaatcacagcagatagacgggaatat
gtgagcagtggtaggacaagaggaggtatgtttggcattcctggtccacctggtcctcct
ggacccccaggagaaaagggagattcgggtgtatctggtggtaggcattggaacgtggag
actggagactactccagtatggctgtgggaatcacagattacatcaaatcccatggcctg
cttcgggatgttgttcaaggtggtgctgtccaagggcctccaggacctcccggtcctcct
ggatacagccagtggtttggttctcaagacaatgctgtggatattgtggagtacatcaaa
tcccaaggtctgctctatgactctggaagagatcaatatggccgttctgggcaaggacta
agaggaccacctggacctccagggtccacccgttggtatggttctcaaggaaacgcaaca
gatctagtggaatacataagatctcacggtgtgttacgtgacatcatcagagagtacagc
agtcatatccaccaaggacctccaggccctcctggtcctccaggtcaaagtcaagggttc
ggttccagtgggaattacacacatcttgtggaatacctgcaatcacgtggtttaattggt
gacagaagatggaacaactacgaacacagtgttcaagggccaccaggacttccagggcct
ccaggagctcccggatacagccgagtgtttggctcccaagcaaacgtcactgatttagtg
gaatttatcagaacaaacggtgccattgtcggagcaccagggagaccaggacaaaaaggg
gaaataggattcccaggcccaaaaggagacagagttcagattctggctttggccaaatta
ccactccactcagctggtgtaggctccaacatacctgtgaccattgtgaggataagcagt
ttagaagatgtaggctccaacatacctgcgactattgtgaagataagcagtttagaagat
gaatga
DBGET
integrated database retrieval system
