Syngnathus scovelli (Gulf pipefish): 125986713
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Entry
125986713 CDS
T08785
Name
(RefSeq) terminal nucleotidyltransferase 4A
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125986713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125986713
03016 Transfer RNA biogenesis [BR:
sscv03016
]
125986713
Enzymes [BR:
sscv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
125986713
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125986713
Transfer RNA biogenesis [BR:
sscv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125986713
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_assoc
NTP_transf_2
Polbeta
TUTase
PAP_NTPase
Motif
Other DBs
NCBI-GeneID:
125986713
NCBI-ProteinID:
XP_049606498
LinkDB
All DBs
Position
Unknown
AA seq
790 aa
AA seq
DB search
MDPRVAWIQPEQKGPANALWMHVWETSQGVRTFSAQHVHNQCVNYAALDVLQNAVVSNKS
LGSSSGHHSIMNGGSACVNDAAISSLGMAISNFFTPASDAGEGKAVSPKVGSSSLESRAA
DSPPSGCTLERTTAGNKNVGLLFALGDSTDNNRYHHHHQQLLHHSRHMLNLCAQSHQVAP
SLPVNHSHPHLHHHHRHHHHPGRRKSDNKASTYGVNYLLSNCTNGNDASSWTPWKTRKYN
PGVLGLHEEVMDFYNFMSPRPEEAAMRKEVVKRIEKIIKELWPTADVQIFGSFSTGLYLP
TSDIDLVVFGKWERPPLQELEQALRKHNVAEPFSIKVLDKATVPIIKLTDQETEVKVDIS
FNVETGVKAASFIKDYVQKYPVLPYLIFVLKQFLLQRDLNEVFTGGISSYCLILMVISFL
QLHPRIDARNPSENLGVLLIEFFELYGRHFNYLKTGIRIKNGGAYIAKDDMAVTNGYRPS
MLCIEDPLLPGNDVGRGSYGAMHVRQVFDYAYTVLSHAVSPLARSYPNKDSESTLGRIIR
LTQEVIDYREWIIKKWGGRDLARADNRVPTPKEPVSEQDPSCRLDSGGGPEEQQRDSASP
QSADSPMSISSPQQHSSASSVSSLSGSDNDSDSAPPCPVPPPPLPPYASFPPLGLAFPAA
FGLGGAKAGIAGPHLLLPPRSQARASLPRGLALHSIAGRQVCIDTGLPAFFHMHPPAHAP
APSSPQPPPSPHSSHAHKNAVKFNVKGLHNPPLITNPAAANRGHPHTHAQYHRNTWRRRK
RDSLPVSPSR
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggatccgagggtagcttggattcagcccgagcagaaaggaccggcgaacgccttatgg
atgcacgtctgggaaacgtctcagggagtacgcacgttctccgctcagcacgtccacaac
cagtgtgtcaattacgctgcgctggacgtgttgcaaaatgccgtggtatcgaacaagagc
ctgggcagcagcagcggccatcacagcatcatgaacggcggctcggcttgtgtcaacgac
gccgcgatatcctccctgggcatggcgatatccaactttttcaccccggcctccgacgcg
ggtgaaggcaaagcagtgtcccctaaggttgggtcttcctcgctggaatcgcgtgcggcg
gacagtcccccctccggctgcacgctggagagaaccacggctgggaataaaaacgtcggc
ctgcttttcgcgctgggtgacagcacggacaacaaccggtaccaccaccaccaccaacaa
ctcctccatcacagccgtcacatgttaaatttatgcgctcagagtcaccaggtggcccct
tccttacctgtgaatcactctcaccctcacctccaccatcatcatcgtcatcaccaccac
cctggccgcaggaaaagtgacaataaggccagcacttacggggtcaattacttgctttca
aattgcactaatggcaacgacgcgagctcttggacgccctggaaaacgagaaagtacaac
ccgggagttctcggactccacgaggaggtgatggacttttacaacttcatgtctccgcgg
cccgaggaggccgctatgaggaaggaggtggtgaaacgcatagagaagatcatcaaggag
ctgtggcccactgcagatgtccaaatatttggaagcttcagcaccggactgtaccttcca
acaagtgacattgacttggtggtgtttggaaagtgggagcgccccccgctgcaagagttg
gagcaggctcttcgcaagcacaacgttgccgagccgttctccatcaaagtgctggacaaa
gcgactgtgccaatcatcaagcttacagaccaggagaccgaggtcaaagtggacatcagc
ttcaacgtggagaccggcgtcaaggcggcgagcttcattaaagattatgttcagaagtat
ccggtgctgccttacctgatctttgtgctgaagcagttcttgctgcaaagagatctgaat
gaagtcttcacgggcggaattagttcctactgcctcatcctgatggtcatcagcttcttg
cagcttcatcctcgcatcgacgccaggaaccccagcgagaacttgggcgtcctgctgatt
gagtttttcgaattgtacggccgccattttaactacttgaaaacggggattcgcattaaa
aacggaggagcttacattgccaaagacgacatggccgtgactaacggttacaggccgtcc
atgctttgcatcgaagatcccttgcttccaggcaacgacgtgggccggggttcgtacggc
gccatgcacgtcaggcaggtgtttgattacgcctacacggtcctcagccacgccgtgtct
ccactcgcccgatcgtatcccaacaaagactcggaaagcaccttaggaagaatcatcagg
ttgacccaggaagtgattgactacagggagtggatcatcaaaaagtggggcggcagagat
ctggctcgagccgataacagagtgccaactcccaaggagccggtgtccgagcaggacccc
agctgccggcttgacagcggcggcggcccagaggagcagcagagggactcggcgtccccc
cagagcgcagactcgccaatgtccatctccagtccccagcagcactcatccgcctcctcc
gtctcttcgctctccgggtcagacaatgactccgattcggcgccaccctgtccagtccct
ccgccccctctgccaccgtacgcgtcattcccaccgctaggcctagctttcccggcggcg
ttcggactgggcggagccaaagcgggaatagcaggaccccatctgctcttgccgcctcgc
tcgcaggctcgcgcctcgctccccaggggtctcgcattgcactccatagccggcagacag
gtgtgtatcgacacgggactccccgccttcttccacatgcaccccccagcccatgccccc
gccccttccagtccccagcctccgcccagcccccactccagccacgcacataagaatgct
gtcaagttcaacgtcaagggcttgcacaacccgccgctcatcaccaacccggcggcggct
aaccgcggacaccctcacacgcacgcacagtaccaccggaacacttggcggcgcaggaag
agggacagcctaccggttagccccagcagatag
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