Syngnathus scovelli (Gulf pipefish): 125989504
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Entry
125989504 CDS
T08785
Name
(RefSeq) calcium channel, voltage-dependent, L type, alpha 1F subunit isoform X1
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04010
MAPK signaling pathway
sscv04020
Calcium signaling pathway
sscv04260
Cardiac muscle contraction
sscv04261
Adrenergic signaling in cardiomyocytes
sscv04270
Vascular smooth muscle contraction
sscv04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125989504
04020 Calcium signaling pathway
125989504
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
125989504
09153 Circulatory system
04260 Cardiac muscle contraction
125989504
04261 Adrenergic signaling in cardiomyocytes
125989504
04270 Vascular smooth muscle contraction
125989504
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125989504
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
125989504
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
125989504
NCBI-ProteinID:
XP_049611919
LinkDB
All DBs
Position
Unknown
AA seq
2094 aa
AA seq
DB search
MQHNHKSAARNGYANAVDGEDGGCEGEEGGEEDGGEGGGGGGGEERDGGDWDEELEGDDQ
GVRMTRTDTLHSTTSSTGTQRRRGQHAKKQVQGTNQVQRAPRALYCLKLNNPIRRAALSI
VEWKPFDIFILLAIFANCVALGVSKPFPEDDSNSTNHDLEQVEYVFLIIFTVETFLKILA
YGLVMHPSSYIRNGWNLLDFVIVIVGLFSVVLETMTHKSGEQASTHHMPGKPGGLDVKAL
RAFRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIALLVLFVIIIYAIIGLELFIGRMHR
TCYYIESDTYVEDDPVPCAFAGHGRQCTVNGTECRGRWDGPNGGITNFDNFFFAMLTVFQ
CITMEGWTDVLYWMNDAIGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKAR
GDFQKLREKQQMEEDLCGYMDWITQAEDMDEYEDGNSRPSLGDLSDKKRGKFGWFSHSNE
THASLPASETASENTENIDEEHTDCCQACSARMMKIGCCRTLRRWNRVCRRNCRTAVKSV
TFYWVVLLLVFLNTSLSASEHYNQPDWLTQVQDIANKVLLSLFTVEMLLKMYSLGLAHYF
VAFFNRFDCFVVCGGIMETILVELDIMPPLGISVLRCVRLLRIFKVTRHWTALSNLVASL
LNSMKSIASLLLLLFLFLIIFALLGMQLFGGKFNFDETQTKRSTFDAFPQALLTCFQILT
GEDWNVVMYDGIMAYGGPVFPGMIVCIYFVILFICGNYILLNVFLAIAVDNLAGGDGDDK
AKEKKTEEAEEEVEEKEVKVDIDEDTEYEEEEEIPEGEDDGGVQLKMADLAPPKEKILPI
PDGSAFFCLSKTNPIRVACHTLIHHHIFTNLILVFIILSSCSLAAEDPIRAHSFRNNVLG
YADYAFTSIFTVEILFKMTVHGAFLHQGSFCRNWFNLLDLLVVSVSLVSFFLHSSAISVV
KILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGK
FYRCTDEAKHTPEQCKGTFVVYKDGDVNHPMVRERIWHNSDFNFDNVLMGMMALFTVSTF
EGWPALLYKAIDANGENSGPIYNYRVEISIFFIVYIIIIAFFMMNIFVGFVIITFREQGE
QEYKNCELDKNQRQCVEYALKAQPLKLYIPKNPVQYKFWSIINSTAFEYVMFVLILLNTV
TLAIQHYEQSKTFSHIMDILNMVFTGLFTVEMLLKLLALRLRHYFVDAWNSFDALIVVGS
VVDIVVTEFSVRNQPAKTSMCVFVQLMECPSPVCVFLCLYQSGEDSSRVSITFFRLFRVM
RLVKLLSKGEGIRTLLWTFIKSLQALPYVALLIAMIFFIYAVIGMQTFGKIAMQDHTQIN
RNNNFQTFPQAVLLLFRCATGEAWQEIMLASLPGKRCDPESDCEPGEEFSCGSNFAIVYF
ISFFMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIKHLD
VVALLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNADGMVTFNATLFALVRTALKIKTEG
NPDQENEELRGIIKKIWKRMKPKLLDEVIPPHEEEEVTVGKFYATFLIQDYFRKFRKRKE
RGGLSVETDATNPSAVQLCKAGLKTLQDLGPEMRMALDEDLDEEEEEEEEEEEEEEETMR
DEEEMDTVGPHKDRRGSGRVIGDSGVVNGGLIHRVGSLGKMSNGGDYDTRISRRDNLRSS
LNHHQRRPSVRNGLVDHTHKRPSHYKHGRRDLREKHWRNGDMDMYRESRYYTREDDADSV
ASTERYYPDDPMHHDGHAPYSHYGNGYTEARRTTRRRLLPATPTGRKPSFNIQCLRRQGS
SDDLPMPGTYHPNSPPRRSRTQTYSSYDCPPSSGHSSVTSSTSWANPCPRRGRLLYAPLI
LVEEEGSPSWGRAGGGEQGGGTGGGCQEKLAGVGRGVNVTGAAPSPAWYGSPGAPPPYRA
YTTLRVPSQLGAPFGEKRGSADSLVEAVLISEGLGLYARDPKFVAFAKREIADACHMTVD
EMESAASDLLGSASHDFLNTTSGDPAALYSDEEPIRMSREEEELADEMSCVTSF
NT seq
6285 nt
NT seq
+upstream
nt +downstream
nt
atgcagcacaaccacaaaagcgcagcacgtaacggctacgccaacgctgtggatggtgaa
gatggtggctgcgagggtgaggaaggtggggaggaggacggaggagaaggaggaggcgga
ggtgggggagaggagagagacggcggggactgggatgaggagctggaaggggacgaccag
ggagtgagaatgactcggacagataccctccactcgaccaccagttccaccggaacgcaa
cgtaggagaggacaacatgcaaagaaacaggtccagggaaccaatcaggtccagcgagct
ccccgagcgctgtactgcctgaagctcaacaacccaatcagacgtgctgcgctgtctatt
gttgagtggaagccttttgacatcttcattctgttagccatctttgctaattgtgtcgca
ctgggtgtgtccaaaccgtttcctgaggatgactccaactccaccaaccatgacctggaa
caagtggagtatgtcttcctcatcatcttcacagtggaaaccttcctaaagatcttggct
tacggtttggtcatgcacccaagttcttacatccgcaatggctggaatcttctggacttt
gttattgtcatcgtcgggttgttcagtgtcgtcttggagaccatgacccacaagtcaggg
gagcaggcgagtacgcaccacatgccaggcaaacctggaggtctggatgtcaaagctctg
cgcgcctttcgggtcttgcggcccctcaggctggtttccggtgttccgagtctgcagatt
gtgctgaactctatcatgaaggcgatggttccgctgctccacatcgctctgctggtcctt
ttcgtcatcatcatctatgccatcatcggcctggagctcttcatcggacgcatgcacaga
acttgctactacatagaaagtgacacctacgtggaggacgaccctgtgccgtgcgccttc
gcgggtcacggccgccagtgcacggtgaacggcactgagtgtcgcggccgttgggacggg
cccaatggcggcatcaccaatttcgacaacttcttcttcgccatgttgacggtgttccag
tgcatcaccatggagggctggaccgacgtcctctactggatgaacgacgctatcggtttt
gagctcccgtgggtctacttcgtcagtctggtcatctttggttccttcttcgttctcaac
ctggttcttggtgtcctcagtggagagttcagcaaagagagggagaaggcgaaggctcgt
ggcgatttccagaagctccgtgagaagcagcagatggaagaggacctgtgcggatacatg
gattggatcactcaggctgaggacatggacgaatatgaggatggaaactcacgtccatca
ctgggtgatttatcagacaagaagagagggaagtttggatggttcagtcactctaatgaa
acacatgcaagtcttcccgccagcgaaacagcttctgagaacacggaaaacattgatgaa
gaacatactgactgctgccaggcctgcagtgctcgaatgatgaagatcggctgctgtcgg
acgttgcgacgctggaaccgtgtgtgtcgcaggaactgtcgtaccgccgtcaaatcggtg
acgttctattgggtggtcctgctgctcgtcttcctcaacacttcgctcagcgcctcagag
cactacaaccaacctgattggctgacgcaggtgcaggatatcgccaacaaggtactgctg
tcactgttcacggtggagatgctgctgaagatgtacagcctgggcctggcgcattacttc
gtggcgttcttcaaccgctttgactgcttcgtggtgtgcggcggcatcatggaaaccatt
ctggtggagctggatatcatgccaccgttgggaatctctgtgctgcgttgtgtccgcctg
ctgcgtatcttcaaggtcacacgccattggacagctctgtccaacctggtagcgtctctg
ctcaactccatgaagtccatcgcctcgctattgctgcttcttttcctcttcctcatcatc
ttcgccctgctgggcatgcagctctttggtggaaagttcaattttgacgagacccagacc
aagcgcagcacctttgacgccttcccgcaggcgctgctcacctgctttcagatcctgacc
ggcgaggactggaacgtggtgatgtacgacggcatcatggcgtacggcggccccgtcttt
cctgggatgattgtctgcatctactttgttattctcttcatttgcggaaactacatcctg
ctcaacgtcttcttggccattgctgtggacaatttggccggaggggatggagacgacaag
gcaaaagagaagaagacggaggaagccgaggaagaggtggaggagaaggaagtgaaggtg
gacattgatgaagacaccgagtacgaggaagaggaggagattccggaaggcgaagatgac
ggcggtgtgcagctcaaaatggctgacctggccccacccaaggaaaagattcttcccatc
ccagacggcagtgcgttcttctgcctgagcaagaccaaccccatccgagtggcgtgtcac
actctaatccaccaccacatcttcaccaacctcatcctggtcttcatcatcctcagctca
tgctcactggccgctgaggatcccatcagagcgcactccttccgcaacaacgttctgggt
tatgccgactacgccttcacctccatcttcacagtggaaatcttattcaagatgacagtc
cacggagcgttcctgcaccagggctccttctgcaggaactggttcaacttgctggatctc
ctcgtcgtcagcgtttcactcgtctccttctttttgcattccagtgcaatctcagtggtc
aagatcctgagggtcctccgtgtgctcagacctctgagggccatcaacagagccaaaggc
ctcaagcacgtggtccagtgtgtttttgtagctatcaggaccatcggaaatatcatgatc
gtcacaacgttgctccagttcatgtttgcatgtatcggagtacaactgttcaagggtaaa
ttctatcgttgtaccgatgaggccaagcacactcctgaacagtgcaaagggacgtttgtg
gtgtacaaagatggagatgtaaaccatccaatggtgcgagaaagaatttggcacaacagt
gacttcaattttgataatgtgctcatgggaatgatggcactcttcactgtgtccacgttt
gagggctggcccgctctgctatacaaagccatcgacgccaacggggagaactcgggtccc
atctacaactaccgtgtggaaatttccatcttctttatcgtctacatcatcatcatcgcc
ttcttcatgatgaacatcttcgtgggttttgttatcatcacattcagggagcagggcgag
caggagtataaaaactgtgaactggacaagaaccagcgccaatgcgtcgagtacgctctg
aaggctcagccccttaagctctacatccccaagaacccagtccagtacaagttctggtcc
atcatcaactccacggccttcgagtacgtcatgtttgtgctcatcctgctcaacaccgtc
acgctcgccatccagcactacgagcagtccaagaccttcagccacatcatggacatcctc
aacatggtcttcactggactcttcactgttgaaatgctgctcaaactattagccctcaga
cttaggcattactttgtggatgcatggaattccttcgacgctctcatcgtggttggcagc
gtggtggacattgtggtgacagagttcagcgtacgtaaccaaccagcaaaaacaagtatg
tgtgtgtttgtacagctaatggagtgtccctcaccggtgtgtgtgtttttgtgtttgtat
cagagcggagaggacagctctcgagtgtctatcacgttcttccgcctcttccgagtgatg
cgattggtcaagctgttaagcaaaggggagggcatccgcaccttgctgtggaccttcatc
aagtcgttgcaggcgctgccgtatgttgccttgctcattgccatgattttcttcatttac
gccgtcatcggcatgcagacgtttggaaagattgccatgcaggatcacacacagatcaac
aggaacaacaacttccagacttttcctcaggctgtcctcctcctcttcaggtgtgcgacg
ggcgaggcatggcaggagatcatgctggccagtcttcctgggaaacgctgcgatcctgag
tccgactgtgagccgggagaagagttcagttgtgggagcaactttgccattgtttacttc
atcagcttcttcatgctgtgcgctttcctgatcatcaacttgtttgtggctgtcatcatg
gacaactttgactacctaacccgtgattggtctatcctgggcccacatcacctggatgag
ttcaaaaggatctggtcagaatacgatccagaggccaagggtcgcattaaacatttggat
gttgtggctctacttcggaggatacaacctcctctcggctttggaaaactgtgtcctcac
agagtcgcctgtaagcgtctggtggctatgaacatgcctctaaacgcagatggcatggtg
accttcaacgccaccctcttcgcgctggtccgcacggcactaaagatcaagacagaaggc
aacccagaccaggagaatgaggagctgagggggatcattaagaagatctggaagagaatg
aaaccaaaactcctggatgaagtcattccaccgcatgaagaggaagaagtgacagttggg
aagttctacgccacattcctgatccaagattacttccgcaagttccggaagagaaaggaa
cgagggggtctaagtgtggagactgatgccaccaacccttcagctgtacagctgtgtaaa
gcgggtctgaagactctgcaggatctcggtccagagatgcgtatggccctcgatgaagac
ctggatgaggaagaggaggaggaggaagaagaagaagaagaggaggaggagaccatgagg
gatgaggaagagatggacacagtgggtccacacaaagaccgacgaggatccggaagagtc
ataggtgacagcggcgtggtaaacggcggtttgatccatcgggtcggttctctcggcaag
atgtctaacggcggcgattatgacactcgcatctcacggcgagacaatctgaggtcatct
ctcaaccatcaccaacgccgaccctcagtcaggaatggccttgtagaccacacacacaag
aggccgtcacattacaaacacggaaggagggatttgagggaaaaacactggagaaatgga
gacatggacatgtatagagagtcacgttactacacaagagaagacgacgcagacagcgtc
gcatccacagaaagatattaccctgatgatcctatgcaccatgatggccacgccccctat
agtcactatggtaacggctacaccgaggcaaggaggacaacacggcggcgtcttcttccg
gccacacccacaggtcgaaagccgtcgttcaacattcagtgtctgagacgtcagggcagc
agcgacgacttgcccatgcccggaacgtaccaccctaattctcctccacgccgttcccgt
actcagacgtacagcagttacgactgtcctccgtcgtccggtcactcctcagtgacgtcc
tccacatcctgggccaatccgtgtcctcgtcgcggtcgcctcctgtatgctcctctcatt
ctggtggaggaggagggcagcccgtcgtgggggcgagccggaggaggagaacaaggagga
ggaacaggaggcggctgccaggaaaagctggcgggagttggaagaggagttaacgtgacg
ggagcggcgccaagtcccgcctggtatggcagcccgggagccccgcctccttacagagcc
tacaccaccctcagagttccttcgcagcttggggctccgtttggcgagaaacgaggctcg
gctgacagcctggtggaggcggttctcatctctgaaggtcttggcctttacgcacgtgat
cctaaatttgtggcgtttgctaaacgggagattgcggatgcatgtcacatgaccgtggac
gagatggaatcggctgccagcgacctgctgggatccgcgagccacgacttcctcaacacc
accagtggagatcccgctgcactctacagcgacgaggagcccatcaggatgagccgagaa
gaggaagagctggccgacgagatgagctgtgtgacgtcattttga
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