Syngnathus scovelli (Gulf pipefish): 125991358
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Entry
125991358 CDS
T08785
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125991358
03036 Chromosome and associated proteins [BR:
sscv03036
]
125991358
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125991358
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125991358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
125991358
NCBI-ProteinID:
XP_049615160
LinkDB
All DBs
Position
Unknown
AA seq
2075 aa
AA seq
DB search
MEDKKRKKEEKRKREASQKVTEQKNKVLDLTKQASAHPPATQSSSASPSPGPTPSASPSP
ATSGPGSAAAQSQGGNNAKRLAVANGQPASSASSSSATGSTSVPGNGNTSSGGAAQAPQQ
QPRYMPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGGGGGGEAPNANIAANSDSSAATTS
LALTSSSVAASTTTSNYANSMWGTSLGSQASSQGREKVIVDGNDLDEWPSIAGSDGGGAS
FTVAGAGGGSGGGSSSNNGMPVNSTSASGNQSSSTSLFSLPNECMQSSGSVAWGAAAAQG
HLGGGNAVASAGPLLQQSSSVSKAAAVPGSHDASGLADGSSGIPGANFNPNANPSAWPAL
VQQEGPGVVGEGPSSSFHHQGLGGTLSANNSASVGLKAGAAGVLGGHQALSVNQSSTHQH
QLHQMQSRDREMAEGKWDSESAGPKIAGDEGAAGGTGGDEDHNPSSSWRGQPSYPASNSK
TGASRTDGWEGREGATGAYRAAEGDNGSSGWGYPGPSRGVNTWGSAGNDSQTGVSQGGWG
TSGVEKGVSSVDWGGSSSSTAGVNPGEVMGGACSSNSSSSGCSTAGNPPVTSTAMNRAWD
NQKGEGDTGEWSEGGHGPRGGSLSSGGNSRCEREPNGSRCRRQPPDTEAALQNLLSRPDL
DPRVLSNTGWGQTQIRQNTAWDLGSQAEYNKSALPSTSSKHPASLGNSSQYSSGPRIPMG
DSNGPGVHPHLLSSAGSSGEAWETSSSSSSSGGASLSGRAPPPLVPNMSNLGVSQSGPVI
TAGTGAGSGSLGQNQQGKPSGWGAGGTADNQETKGWGNEEWRTNRGNGGAWSAMGQQGNL
ASTGWGGNDERGAVGWKEMGGEGRGGGWGSGHKVGPGRDWGEQESKSNSGGAGWEDEPKN
GGRNSGGGDSGTGGWGSWDEDAPRRSWGPGGTGAGGSGAVGVAGSKPHQNWSGGNKMQQM
PNSQSGSITGLQAQLQQQQSQARNQTPQLQQTLDQGAMQGAGGRKPITQAQNQSSGWTSG
PIPASHGLGGSGSEPSGWEEPSPQSLSRKNDIDDGTSAWGDPTHYNYKPVNLWDKNSTPA
GQHQQPHAQQPPTQQLNRPGTGPGGGSRDFNTSHGQGKVSPMGSSGWGGTPPASPTVDNG
TAAWGKPTDAPSGWGEPDDAGAKTGWGNPPPNPIKSGSKSMQDSWGDKEGSVTASRHSSW
EEEEEGGSMWNSTGSQGSGSSWGQGSNGGWGQSHNVKKPSNKGPLKVGGDSWMSPINRQF
SNMGLLNDDPSGLTIDLAPGALQEKKMEMDKRAMGMMDYNGDMRKGRGGGSGMAYRSPIS
KESAPGDAASFYDKTLLLNNQDGYLGEDGPCSLFSPPTAYKPHSLFNHTIPFRQGGHSLL
GSSGGMSQPRHQPNIPPMNQSPGIRAQVPHQFLSPQVPGSMLKQMPPPSGSVGGVGGVGG
VAGVGGGVFPPQLSPQHIAMLSSIYPPHIQFQLACQLLLQQQQQPQQQLLQNQRKFPPNV
RQQTDPQQLARIMAVLQQQRQQQQVGSLGGSIKLSPSHHGGSGAKLHGADTLPHQGLAGS
VADLHQKTLGPYSSFSSGMNLTGMDLGGSVVGGPGGMKDMGAQQSRFKWMMEGHSSPDTP
SPENAFHKNGPVNPMKMPGASPYSQYDMLVGDAQGSTNWHRTPGKMSAKPTTTASWPPEF
QPGVPWKGIDRVDPESDPDMTPGSMMGNTVSPGLNDSEHQLLQDNTDSIPPLNTLLPSPG
AWPYSASDALNNAHNSAKYTDYKTGWPPEPIGHKSWKASRGSSQAQLSRPPPGLASQKQI
SPTPWSGGAPRLAGRGWSSGSGTAGSAWSDGSSRESCWLVLSNLTPQIDGSTLRTICMQH
GPLLTFHLGLTQGSALIRYGTKQEAAKAQSALHMCVLGNTTILAEFMSEEDVARYIAHSQ
AGGSGSGGSATAPAASSAVGTNGSGTTCDLAAGGGGGGNGTGGSRQGGSPAGTVVPGAAG
HSESTWQSLEGSGSSSDQSAPSAPGLGIFSQWSGNSGGGVEAGRQGLWGGMGGMSGAGYP
GSSLWGSPALEDRHQMGSPASLLPGDLLGGGADSI
NT seq
6228 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaggaaaaaagaagaaaaaaggaaaagggaagcctcccagaaggtt
acagagcaaaagaacaaagtgctagatttgaccaagcaggcgtctgcccatccacctgca
actcagagcagctctgcctctcccagccctggacccaccccctctgcatccccatcccca
gccacttcaggccctggcagtgctgccgcccagtcgcagggtggtaacaatgccaagcgc
cttgctgtggccaacggacagcccgcctccagcgccagttcttcctctgccacgggcagc
acaagtgttccagggaacgggaatacaagtagcggaggtgcggcccaggcgcctcagcag
caacctcgctatatgccgagagaagtgccgccgagattccgctgccagcaggaccataaa
gtgctactgaaaaggggtcagccgccactgtcctccatgctgctgggagggggaggagga
ggggaggcccccaatgcaaacatagctgctaactcagattctagtgcagctaccacctca
ttggccctcacctcatcatcagttgctgcttctaccactacttctaattatgcaaattcc
atgtggggcacaagcttaggcagccaggcctcctctcagggcagggagaaggtgattgta
gatgggaacgacctggatgagtggcccagcatcgctggaagtgatggaggaggagcttct
ttcactgtggctggagctggaggagggagcggcggcggcagcagcagcaacaacggaatg
cctgtgaacagcacgagtgcctctggcaaccaatcctcatccacttccttgttctctttg
cccaatgaatgtatgcagtcgtccggtagtgtggcatggggggcggctgccgcccagggc
catcttggaggagggaatgcagtagcttcagctgggcctctattacagcagtcctcctca
gtttccaaagccgccgctgtgccaggaagccatgatgccagtggcctcgctgatggcagc
agtggtattccgggtgccaactttaatccaaacgccaacccttcggcctggcctgccttg
gtgcaacaggaggggcccggcgttgtcggggaaggaccttcgtcgtccttccatcaccag
ggcctcggagggactttatctgccaacaattctgcttccgtagggctaaaggcaggggca
gccggggtgctaggcggtcaccaagctttgtctgtgaatcaatcaagcactcatcagcac
caacttcaccaaatgcaatctagagaccgagaaatggcagagggcaagtgggatagtgaa
tcagcgggaccaaaaattgcaggagacgaaggagccgcgggaggaacgggaggcgacgaa
gaccacaatccttcttcctcgtggaggggccaaccctcttaccctgcatccaactccaaa
acgggtgcctcaaggactgatggatgggagggcagagagggtgccacgggggcatacaga
gctgctgagggtgataacgggtcttcgggttggggttatccggggccctctcgaggggtt
aatacttgggggagtgctggaaatgatagtcaaactggggtatctcagggagggtggggg
acatctggagttgaaaaaggggtgtctagtgtggactggggtgggagttcctccagcact
gctggagttaatcctggagaagtgatgggaggagcctgcagcagtaacagcagcagtagc
ggatgcagcacagccggcaatcctcccgtcacctcaacggcaatgaacagagcttgggac
aatcagaagggagagggggacacgggggaatggagcgagggaggacacggaccacgggga
gggtctttatccagcggtgggaattccagatgtgaaagggagcccaacggcagtcgttgc
cggcgtcagccacctgatactgaagctgccttacaaaacctgctcagccgtcctgatctc
gatccaagggtactgtcaaacacaggctggggccaaacgcagatcagacaaaacacagct
tgggatcttggtagtcaagccgaatacaataagagcgcactcccatcaacctcttccaaa
cacccagcttctctcggcaattcttctcagtattcttctggacccagaatcccgatgggt
gattcaaatggaccaggtgtccaccctcacttgctttcttctgctggctcttccggggag
gcctgggagaccagcagcagcagcagtagcagtggtggggcctctttatctgggagagcc
ccacctcctttggtcccaaacatgagtaatcttggcgtctcgcaatcgggtccagtcatc
acagcaggtactggtgctgggtcaggatcgctgggacaaaaccagcaagggaagcctagt
ggctggggtgcaggagggacggcagataatcaggagaccaaagggtggggtaacgaagaa
tggagaaccaatcgaggaaatggtggcgcttggagtgctatggggcaacaaggtaacctt
gcgagtacaggctggggaggaaatgacgagaggggagcagtcgggtggaaagaaatgggt
ggggaaggacgaggaggtggttggggctcagggcacaaggttgggccaggtcgggactgg
ggcgaacaggagtccaaatcaaatagcggtggcgcaggatgggaagatgagccgaagaat
ggcggaaggaactcaggtgggggagattcaggcacgggtggttggggaagctgggacgag
gatgctccgcggagatcctgggggccagggggcacaggggcaggagggagtggcgcagtt
ggcgtcgctgggtccaaaccccatcaaaattggagcggaggaaataaaatgcaacagatg
ccaaacagccagtcaggctctatcacaggcctacaggcacaactgcagcagcaacaatca
caagcccgcaatcagacgccacagctgcagcaaacattggaccaaggggctatgcaaggg
gccggtgggagaaaaccaatcactcaagcccagaaccaaagctcaggctggacctcaggg
cccatccctgccagtcatggattaggtggaagtggatctgaaccaagtggttgggaggaa
ccttccccacagtctttaagcaggaaaaatgatatagatgacggaacgtcagcatgggga
gacccgacccattacaactacaaaccggttaatctgtgggataagaacagcacccctgct
ggtcagcaccagcagccacatgctcaacaacctccaacacagcagctaaatagacctggt
acgggacccggaggaggcagcagggacttcaacactagtcatggacaaggaaaggtttct
ccaatgggttcctcaggttggggtggtacacctccagctagtcccacagtagacaacggc
acggctgcttggggaaaacctacagatgctccttctggctggggggaacctgatgacgct
ggtgccaaaactggctggggaaaccctccccccaatcccatcaaatctggttcaaagtct
atgcaagacagctggggggacaaagaaggttccgtcacagcttcgcgtcattcgagctgg
gaggaagaggaggagggcgggagcatgtggaacagcactggctcccagggtagtgggtcg
tcttggggacagggtagcaatggcggctggggacagagccacaatgttaagaagcctagc
aacaagggtccgctcaaggttggcggggattcctggatgagcccaatcaacagacaattc
tctaatatggggcttctgaatgacgatccgagcggtctgaccattgacctggctccaggc
gctctccaggagaagaagatggaaatggacaaaagagccatgggaatgatggactacaac
ggagacatgaggaaaggaagaggaggagggagcggcatggcttatcgctcgcccatttcc
aaagagtcagcacctggtgatgccgcttctttttacgacaagaccttgcttttgaacaat
caggatgggtaccttggggaggatggtccttgctctctcttctcaccacccactgcctac
aagccccattccctcttcaatcacactatcccctttagacaaggtggccatagcctcctc
ggcagtagtggagggatgtctcagcccagacaccagcccaatattccacccatgaaccag
tccccagggatacgagcacaagtgcctcatcagttcctgtcacctcaggtgccaggctcc
atgctgaagcagatgccccctcccagcgggagcgtggggggtgttggcggtgtgggagga
gtggcaggagtcggcggcggcgtgttccctcctcagctgtccccccaacatatagccatg
ctcagcagcatctacccaccgcacatccagtttcaattggcttgtcagctcctcctccag
caacaacagcagccgcaacagcagctgctgcaaaaccagagaaagtttccgccgaatgtg
cggcagcaaactgaccctcaacagttggccaggatcatggcagtactccagcagcaacgg
cagcagcagcaagtcgggagtttgggtggcagcatcaagctctcaccctcccaccatggc
ggaagtggtgccaaattacacggggctgacactttgccccaccagggcctggcaggttct
gtggctgacctccatcagaaaacgcttggaccctactcgagctttagttctggtatgaac
ctcactggtatggacctgggtggctctgtggtgggggggcccggaggcatgaaggacatg
ggagctcaacaatctcgtttcaaatggatgatggaggggcactcctcgccagacacaccc
tcacctgaaaatgcattccacaaaaatggtcctgtcaaccccatgaagatgccgggggcc
tcgccctactcacagtacgacatgcttgtaggagacgcgcaaggcagcaccaattggcat
cgcacccctggcaagatgagtgccaagcccaccactacggccagctggccccctgagttt
caacctggtgttccctggaaaggaatagatcgggtcgaccccgaatcggaccccgacatg
actccggggagtatgatggggaacaccgtctctcccggcctcaatgactctgagcaccag
ttgttacaagacaatactgattccatccctcccctcaacaccttactgccttcacccggt
gcctggccctacagtgcctcagatgcccttaacaacgcacacaactcagcaaagtacaca
gactataagactggatggccccccgagcccattgggcacaagtcctggaaagccagtcgc
ggcagcagccaggcgcagctgtcccgcccacctccaggcttggccagtcaaaagcagata
tcgcctaccccatggtcaggcggtgctcctcgactggctggcaggggatggagcagtggc
tcaggcaccgctggctccgcttggagcgacggcagctctcgtgaaagttgctggctggtg
ctcagcaatctcacaccacagattgatggctccacgcttcgaaccatctgcatgcagcac
ggccccctactgacctttcacctcggcctgacccagggtagcgcacttatccgctatggc
accaaacaggaagcagccaaagcccagagtgccctccacatgtgcgttctgggcaatacc
accatcttggcagagtttatgagtgaggaggacgtggcccgatacattgcacattcccag
gctggaggctcagggagcggaggctctgccaccgccccggcggcatcttcggcggtgggg
acaaacggtagcgggaccacctgcgatctcgctgcaggaggaggtggaggaggaaatggc
acaggcggaagcagacaaggagggtctccagcagggacggtcgtacccggggcagctggg
cattccgaatccacgtggcagagcctggaaggcagcggcagctcatcggaccagtcggcc
ccctccgcgcccgggttgggcatcttctcccagtggagcggcaacagcggcgggggggtg
gaggcgggaaggcaaggtctgtgggggggtatgggtggcatgagtggggccgggtatcct
ggtagtagcctctggggttcgccagcacttgaagatcgtcatcagatgggcagcccggcc
tcgctgctgcctggggaccttctgggcgggggcgctgactcgatctga
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integrated database retrieval system
