Shewanella sedimentimangrovi: JYB85_08250
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Entry
JYB85_08250 CDS
T07846
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JYB85_08250 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_08250 (recD)
Enzymes [BR:
ssem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JYB85_08250 (recD)
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JYB85_08250 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
Viral_helicase1
UvrD_C_2
AAA_11
Helicase_RecD
SH3_13
RecD_N
UvrD-helicase
AAA_22
UvrD_C
nSTAND3
SLFN-g3_helicase
Herpes_Helicase
AAA_28
DEAD
AAA_16
T2SSE
TrwB_AAD_bind
MeaB
FtsK_SpoIIIE
AAA_25
Flavi_DEAD
NTPase_1
ResIII
ATPase
Motif
Other DBs
NCBI-ProteinID:
QSX38781
LinkDB
All DBs
Position
complement(1914016..1915917)
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AA seq
633 aa
AA seq
DB search
MILTCPIPMAQQLKVWQQQGLLEPLNRHFALELTRLHGDDSPLGLLCCALVSRNLSAQNS
CLLLSDLDLQNPLGERHPSVSINTDLPGLLQAIAALPMVAAPGDRITKPLVLDGDRLYLK
RYHSYEVSVANTLLSLSREQQPLSEQTAQLLGALFPDATDYRADNDTAPDWQKIAVATAC
RQKLTVITGGPGTGKTTTVTKLLLLLLAVEPELRIRMVAPTGKAAARLSESIKASKQRLG
SSLDPAVISPQQVAALPEDAATLHRLLGVIPGSHKFRHHGDNPLELDLLLIDEASMVDLP
MMHRLLDALPPKARLILLGDQDQLASVEAGAVLADICQGISQGSRVSREQAAILEQLTGY
PFSPTENAGLGDNLCRLWHSHRFSGDAGIGRLAKAVNEGDNQAVTQVWQQGYRELSWLGH
DAGKGLEQLLQLAVSRYRDYLEAMVRGESADAIIAQYNRFRVLCAMRAGDFGVEGINRLL
TARLARERLIVPNQEFYAGRPIIIGSNDYGLGLFNGDIGIILPQGPDKRLLACFVQSDGS
LLKVLPARLPSHESCFAMTVHKSQGSEFEQVALVLPPDPSPGQQQLISRELVYTAITRAK
DAFCCLGTEALFAAAVARPTRRASGLAARLWGS
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatcctcacttgccctatccccatggcgcagcagctcaaagtctggcagcaacaggga
ctgctggagccactcaatcggcactttgccctggaactgacacggctgcacggggatgat
tcccctctgggtttactgtgctgcgccctggtgagccgtaatctcagtgcccagaacagc
tgcctgctgttatcggatctcgacttgcaaaatcccctcggtgagcgccatccctcggta
tccatcaacaccgacctgcccggactgcttcaggccatagcggccctgcccatggtggcg
gcccccggggacaggatcaccaaacccttggtgctggacggtgacaggctctatctcaag
cgttaccacagctatgaagtgagtgtggccaacaccctgctgagcctcagtcgtgagcag
cagcccctctccgagcagacggctcaactactcggagccctgtttcccgacgccactgac
tatcgtgctgacaacgacactgcgccggattggcaaaaaattgccgtcgccaccgcctgt
cgccagaaactcacggtcatcaccggcggaccgggtacgggcaagaccaccacagtgacc
aaacttttgctgttattgctggcggttgaacccgaattaaggatccgcatggtggccccc
acaggcaaggcggcagcgcgtttgagtgagtccatcaaggcctccaagcagcgtctgggc
agcagtctggatcccgccgtcatcagcccgcagcaggtggccgccctgccggaggacgcc
gccaccttgcaccgcctgctgggggtaattccgggttcacacaaattccgccaccatggc
gacaatccgctggagctggatctgctgctgatagacgaagcctccatggtggatctgccc
atgatgcaccgcctgctggatgccctgccgcccaaggcgcggctgattttgctgggcgat
caggaccagctggcctcggtggaagccggcgccgtgctggcggacatctgccagggcatc
agccaagggtcgagggtgagccgcgagcaagcagccatactggagcagctgaccggatac
ccgttcagtcccacggaaaacgccggacttggcgataacctgtgccgattgtggcacagc
cacagattcagcggcgatgccggcataggtcgtttggccaaggccgtcaacgagggtgac
aatcaggcggtcacccaggtatggcagcagggttatcgggagctgagctggcttggccac
gacgccggcaagggattggagcagctgttgcagctggctgtgtcccgataccgcgactat
ctcgaagccatggttcggggcgaaagcgccgacgccatcatagcccagtacaaccgcttc
cgggtgctgtgcgccatgcgtgccggtgacttcggcgttgaaggcatcaaccgcctgctg
accgcccgtctggcccgggaacggctgatagtgcccaaccaggagttttacgccggacgc
cccatcatcattggcagcaacgactatggcctggggctgtttaacggcgacataggcatt
attctgccccaggggccggacaagcgcctgctggcttgtttcgtgcaaagcgacggcagc
ctgctcaaggtgttgccggcgagattgccaagccacgaaagttgtttcgccatgacggta
cacaagagccagggcagcgaatttgaacaggtggctctggtgctgccaccggacccgtct
ccgggccagcagcaactcatcagccgggaactggtttacaccgccatcacccgtgccaag
gatgccttctgctgccttggcactgaagccctgtttgctgccgccgtggcgcggcccacc
cgccgcgcatccggcctggccgccaggttgtggggcagctaa
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