Solea senegalensis (Senegalese sole): 122769865
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Entry
122769865 CDS
T07721
Symbol
col27a1b
Name
(RefSeq) collagen alpha-1(XXVII) chain B isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122769865 (col27a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssen00536
]
122769865 (col27a1b)
Glycosaminoglycan binding proteins [BR:
ssen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122769865 (col27a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
122769865
NCBI-ProteinID:
XP_043882677
LinkDB
All DBs
Position
LG5:21606868..21676674
Genome browser
AA seq
1696 aa
AA seq
DB search
MEPDNAPYSKLKTTGVGGRVLILWTILSCTCSLRLAQAQDVDVLQQLGLSGQRAGGLSSS
GTRPVPNGIIPFKSGVILTPRARVQVPLRTVLPADYSFTNLSMILSFSVHRINNAFLFSV
LSKKRKVQLALQFVPGKVVVHLGQRNSVSFDYDVHDGRWHSLALDVQGHQVFLHTSCGKK
SLHMDLHSKKAEVLDPESSFLLGKINHNSVPFEGAICQFDIYPSAKAAHNYCDYIKKHCR
EADTYRPVFPPLLPLFSTDPNVTVTHITPLSPTELSKKGHRPTMALTEENIRTTMLVLTD
HLPMQNETSAFQTINTPEPDAVSVSPPVLPGLESPLNFPTQTVTTSLRISVTNPNLTART
QGDTNSPKPSGNSMDLPASIRPFEMRPNLQTTAASPSNTHLPHKKQLSTVAPKNPEPKVT
SVQDVRPTSIIPVTPAATDGFQTFDQEPTHYSLLAGPPGLKGEPGPPGLQGLPGLPGKPG
KRGPRGPPGPHGNPGPPGPPGVKGQKGDPGLSPGQAPKGLKGEPGVAGPPGVPGQHGRKG
QKGHPGSCGLPGETGEWGDDGSPGAKGYPGRQGFPGLVGIMGPKGVRGHIGVPGLFGLPG
PNGERGIPGIHGQKGKMGRPGFPGDFGERGPPGPDGNPGELGAPGPCGVPGLIGDMGPVG
IMGLAGSSGLKGVPGNPGDPGLKGDKGDIGLLGEPGECGLQGDKGIRGSSGLPGPRGKPG
PQGKPGEKGPDGLSGPLGPEGFPGDIGPPGQNGPEGPKGKQGIRGLPGPVGATGLQGDEG
PVGPVGPGGLEGRPGRQGFPGSTGPDGLKGETGITGEVGKLGERGLPGFTGPAGEMGIAG
EKGDRGKMGIPGPPGERGPMGHAGIPGERGPPGPDGIPGPPGSRGPIGIRGPKGIRGPRG
PDGPVGEKGSLGIKGPDGPPGKLGLAGEMGKLGEPGEAGPKGFPVSDYTGCQGSSGPPGA
KGFPGDPGPAGPPGTMGPLGDMGPMGPLGKAGERGLPGETGEKGDTGLPGNIGEQGLIGQ
RGEPGIDGEAGQSGSDGAKGEKGDAGLEGAKGDRGEIGLKGKEGPPGPPGLVGVRGQEGK
PGKMGETGKPGEKGIKGHQGDLGEKGPVGDHGEMGLIGPKGARGSVGPVGAPGRTGQQGN
PGISGYEGHMGPQGPLGPPGPKGEKGEQGDDSKAEGPLGPQGDRGPPGDRGARGEPGDPG
HLGHMGFDGKRGDAGATGLPGHPGPKGQTGLKGSKGDQGQKGKLGVSGSPGTKGPPGPEG
PPGSKGSVGREGLEGLPGMDGLPGKDGSKGVKGEQGEDGEVGLPGKPGPQGKAGVTGLPG
SQGSFGPKGERGLSGQTGPSGKRGSVGGMGSPGKQGDQGSKGHPGDSGEKGFPGVFGLFG
PKGPTGDIGPAGIQGPKGPRGLRGMEGALGPVGIIGPSGHPGPQGDKGNRGETGSQGPKG
FPGPRGPPGPPGLPSSALSLRNEALGAAFQVIINSHTPLRQENFQTMEQPMLDQGTEIFK
TLQYLNNLIQGLKNPLGTRNNPARICRDLYNCEHRMSDGTYWIDPNLGCTADTIEVTCNF
TAGGQTCLKPVTVSKLEIGVGRIQMNFIHLLSTEAVQHITIHCLNTPVWAAGPFLQPSTT
AVSFKAWTGEKIRAGDLLEPLTPIDDCWMKDGRWHQTHFIFQTQDTNLLPIVDVSNLPTT
EPGSRYHLEVGPVCFL
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atggagccggacaatgccccgtactccaaactcaaaaccactggagtcggggggagagtt
ctgattctctggactatactttcttgcacatgctctctgaggcttgcacaagcacaagat
gtggatgttctgcagcagcttgggctttctgggcaaagggcaggtgggttatcatcttca
ggcactcgccccgtcccaaatggcatcatccccttcaagtctggagtcatcctcactccg
agggcacgtgtccaggtgcctctgcgcactgtcctccctgctgactacagcttcaccaac
ctctccatgatcctcagcttctctgtgcatcgcatcaacaatgctttccttttctcagtt
ctgtcaaaaaaacggaaagttcaacttgcattgcagttcgttccgggtaaggtcgtggta
cacttggggcaaaggaactctgtgagttttgactatgatgtccatgatggccggtggcac
agtcttgccttggatgtccaaggccatcaagtgtttttacacacatcttgtggaaagaaa
agcttacatatggacttgcattctaaaaaagcagaggtcctagatccagagagctctttc
ctgctgggcaaaataaaccacaactcggtgccgtttgaaggtgccatctgtcaatttgac
atttatccatctgctaaggcagctcataactattgtgattacattaagaaacattgccga
gaagctgacacatatcggccagtgtttccacccctgctacctctattttccacagatcca
aacgttactgtcactcacataactccattgtccccgacggagctttccaaaaagggtcat
agacctactatggccttgactgaagaaaacatcaggactacaatgcttgtattaacggac
cacttaccgatgcagaacgaaacatctgcgtttcagaccatcaacactccagaacctgat
gctgtatctgtttctcctccagttcttccagggttggaaagcccgttaaactttccgact
caaacagttacaacatctctgaggatcagtgtgacaaatccaaacctaaccgccagaacg
caaggagatactaactccccaaaaccttctgggaatagtatggatctacctgcctcaatt
agaccctttgagatgcggccaaacctccagaccacagctgcttctccttcaaacacccac
cttccccataaaaagcagttgagcacagtagctccaaagaatcctgagcccaaagtgacc
agcgtgcaggatgtcagacccacctcgattattccagtcactccagctgccacagatggc
tttcaaacatttgaccaggaaccaacccactactctttgctggctggaccacctggacta
aagggagaaccaggaccaccgggccttcaaggacttccagggttgcctggaaagccaggg
aagagaggcccacggggtccccctggtcctcatggaaaccctggtccaccaggacctcct
ggagtgaagggacaaaagggagatcctggactgtcccctggccaagccccaaaaggacta
aaaggagagcctggtgtcgcgggcccccctggagtgcctggccaacatggacgaaaggga
caaaaaggtcatcctggctcttgtggtctcccaggtgaaactggtgaatggggagatgat
ggaagccctggggccaaaggctatcctggcaggcagggttttcctgggcttgttggaata
atggggccaaaaggagtcaggggtcacattggcgtccctgggctttttggcctccctggt
cctaatggtgagagaggtattcctggcattcatgggcagaagggcaagatgggtaggccg
ggatttcctggggactttggagagagaggaccacccgggcctgatggaaacccaggagaa
ctgggtgctcctgggccatgtggagttcctggtcttattggagacatgggccctgttggc
attatgggcttggcaggatcttcaggactcaagggagtaccaggaaacccaggggaccca
ggactgaaaggtgataagggggatatcggcttgctaggagagccaggagagtgtggactt
caaggggacaaaggtatccgtggctcatctgggttaccgggtcctcgtggaaaacctgga
ccacagggcaaacctggggaaaaaggccccgatggtttatctggccctcttggcccagag
gggtttccaggtgacattggtcccccaggacaaaatggccccgaaggacccaagggaaag
caggggataagaggtttgcctggtccagtaggagcaactggacttcagggtgatgaggga
ccagttgggccagtcggacctggtggactcgagggcaggcctgggaggcagggattccct
ggatcgacaggcccagacggacttaagggcgagactgggattactggtgaggtcggaaag
cttggcgagaggggactacccggttttactgggcctgctggagagatgggcattgctgga
gaaaagggggaccgagggaaaatggggatccctgggccgccaggggaacgggggccgatg
ggtcacgctggaatacccggagagagggggccccctggaccggatgggatcccagggcct
cctggttcacgtggacccataggcatcagaggtcctaaaggcattaggggtccgaggggt
cctgatggcccagtgggagagaaagggtctctgggaataaagggccccgatggtccacca
gggaaattgggcctcgcaggagagatggggaaacttggtgagccgggtgaagctgggcct
aagggatttccagtaagtgactacacgggatgtcaaggatcttcagggcctccaggagcc
aaaggatttccgggagatcctggaccagcagggccaccaggaacgatggggcctctgggg
gatatgggaccaatgggtccactgggcaaggccggagagagaggactgcctggtgaaact
ggggagaagggtgacactggtttacccggcaacatcggtgaacagggtttgattggccag
agaggtgagccagggattgatggggaggctggacagagcggatcagatggggccaagggt
gaaaagggagacgctggtttagagggtgcaaagggagacaggggtgaaatcggcctgaaa
ggaaaggaaggacctcccgggccccctggactggtgggtgtaaggggccaggaggggaaa
cctggcaaaatgggtgaaacaggaaaacctggagaaaaggggatcaagggccaccaaggc
gacctgggagagaaagggccagtcggcgaccacggagaaatggggttgatcggtccaaaa
ggagcgagaggtagcgtcgggccagtgggcgctccagggagaacaggccaacaaggaaat
ccaggtatatcaggttatgagggtcacatgggaccacagggcccactggggcctcctggg
ccaaaaggtgaaaagggcgaacagggagacgacagcaaagctgaaggtcctctcggtccc
caaggtgacagaggtcctcctggagacagaggagcgagaggagagcctggagaccctgga
caccttggtcacatgggttttgacggaaagagaggtgacgctggtgccacagggcttcct
ggacatcctgggcctaaaggtcaaactgggctgaaaggatccaaaggtgatcaaggtcag
aaaggaaagttgggggtgtcaggctctcctgggaccaaaggaccaccaggtccagagggt
ccacctggctcaaaggggagtgtgggcagggagggccttgagggtttgcctggaatggac
ggactgcccggtaaagatggaagcaaaggagtgaagggggagcaaggtgaagacggagaa
gtgggcttacctggaaaacctgggccgcagggtaaagctggtgtgacagggcttcctgga
agtcaaggctcctttggaccaaagggagagaggggtctctcgggtcaaactggtccatcg
ggaaaaagaggctccgtcggcgggatggggtcgccaggaaaacaaggagaccaaggatct
aaaggacatccaggggatagtggagaaaaaggatttccaggggtgtttggtctatttggg
ccaaagggacccaccggggacattggcccagcagggatacagggacctaaaggaccgcgc
ggtttaaggggtatggagggagctctgggtcccgtcggcatcattggccccagcggtcat
cccggaccccagggtgacaaaggaaatcggggggagacgggctcgcaaggaccaaaggga
tttcctggtcctcgtggaccaccaggacctccaggtcttcccagttctgcactttcactt
agaaacgaggctcttggtgccgcctttcaagtcatcattaattctcataccccactgagg
caagagaattttcagaccatggagcagcctatgttggaccaaggaacggagattttcaag
accctgcagtatctcaataatctgatccagggtttaaagaacccacttggaacccgcaac
aaccctgccagaatctgccgagacctctacaactgtgaacacagaatgagcgacggcact
tactggattgacccaaaccttggttgcactgctgacactattgaggtgacatgcaatttc
actgctggaggacaaacttgcctgaagcctgtcacagtatccaagttggagataggagtg
ggccgtatccagatgaacttcatccaccttttgagcacagaggctgtgcagcacatcacc
attcactgtctcaacacaccggtgtgggcagcaggacccttcctgcagccttcaaccaca
gctgtgagcttcaaggcttggaccggtgagaagatcagagcaggagatctactggagccc
ctcacaccgatcgacgactgctggatgaaagatggccgctggcatcagacacacttcatc
ttccagacccaggacacaaacttactccccatagtggacgtgtccaacttaccaacaaca
gaacctggctctcgctatcacctggaggttggacccgtgtgtttcttataa
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