Solea senegalensis (Senegalese sole): 122770474
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Entry
122770474 CDS
T07721
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03440
Homologous recombination
ssen03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122770474 (palb2)
03460 Fanconi anemia pathway
122770474 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122770474 (palb2)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
122770474 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
122770474 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
122770474
NCBI-ProteinID:
XP_043883279
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Position
LG6:20373257..20382575
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AA seq
1341 aa
AA seq
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MSRMESNVEEQLKTTLHYDDKEKLRKKLELLQREYLKTAQRLQRAERLDAVRRHVKSRIS
QQNHQDQSDPEVKPHIKPSSLTLNSASQVPADPDNSRSSQEIRFLFPSDAACQNTPDPSH
DADGGHRPSSALRLRSWRSRLRWERKSAEASMLTDNSGDGKGQSEKMEYAKEEGEEDKVK
SEREEVVNESEKLFSASETQSSSLLLSHWKTHAHTGIGDMQGSNELGEMEVSADEKKGSE
LVKFWNAAEESIKGCTLNGKIKEREGDVDQNTADKVGHEKSDNNIIEIKEEKIGNEKDEM
SVGLLDSCTLVEGLLFPAEYYVRTTRRMTSSQSQPDIQAVILSQLSAGRHRRSRGRGRGV
NRHTHSSECSDQHIQTEISPLTIAPVHTPSQVSTVDALAELTGNSPNFSEISNEIPHSAT
PRRGGKRKRGRGRGRTPTPRSSLIHQAAYVKTSEDLQPTTIPVSSSQSLHAPGKPKPRHP
LGEPVPVADDSQPASTAAVNETQSSPASGELQKLFPIFLKSSSRTNTTAQIIQSTPSCRS
LLLPSSPSAHTSLLPLSWLTSGSLLRNMRNLDIHQDFHLPDDQFASLKLHKLRKVAMELE
HFTPPSYNTRSSNRYAHLCPSPSDPVMSLPLPLSLTPMIANSQKQAATQSGDEQNLSVGY
CKLANPSLAKEPSNQENTETHREEKTENTSTESVIVVHDFAAGCLHQTSEQDTEILNVST
SNTQTPSDRNDKPQLHVSFVDMCVDNVNDYEVTLCAGDVSSLEDQSTSYHQGEDRAVIKT
LYFDCTHQEMPGEPFNSCTAAQTCNDSEASGESPAKHPYVKTPDKGLNETIEAATHPPRD
SAEENQCLPHQSVHSQLLLSPTLASAPYPFTTTYLPPSALISSPTLPSVGLTPHRVSTGL
PLTSSPSAPALTLPPPHSPASLTPSPPTLSPCQSITSLPPSQSLICSHNQASLEPPDTGN
QCQVVEPTSCPTESCIQSQGSSGQAGQKTEETAEQHVMRCMDTLKAPAGGCLVDTCCLLG
PSGELCVAAAGKWAVCVWSQTPASDWTLIHTWTFNDPVINVSPIPDAAGLMIVTLGQLEI
REVRLLSCSSLMQVLLCEGVVQAAVGVSKSRVVTSSHSTTGSTLQVFSISDHDSTPSSQP
LVSPGVCIGALAPVEGLSDAVLGTDEGGRVFVWNLETGQLLRKIVFGDGLSHTVCLRGFS
SRGVLFVLLQHQSLSSLDEQEKEAKGKDGIFSEEEEETKKTALFSLLAVNPLNSKSVVAT
RLYPPKAWSGRLCEADVSSSRVVGLSQSGCVCVWELGRQQASRMVWAPEGEGWQVARWGG
RDTLVTGHLNGDVTLHCYRKL
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggatggagagcaatgtggaggagcagctgaagacaacactgcactatgatgac
aaggaaaagctccgtaagaagttggaactcttacaaagggaatatctcaaaacagcccag
agactccagcgagctgagcgtttggatgccgtgcgtcggcatgtgaagagcaggatctca
cagcagaaccaccaagaccagagtgacccagaggtcaaacctcatatcaaaccgtcatca
ctgacactgaactcagcgtcacaagttccagcagatcctgataactcgagaagtagccag
gagatcaggttcctattcccctctgatgctgcttgccagaacaccccagatcccagtcat
gatgcagatggagggcacagacccagttctgccctgcgcctcaggtcttggcgcagccgt
ctacgttgggaaaggaagagtgcagaggcctccatgctcacagacaacagtggggatggt
aaagggcagagtgaaaagatggagtatgccaaagaagagggagaagaggataaagtcaag
tctgaaagagaagaggttgtgaatgaaagtgaaaagttattttctgcttcagagacacag
tcgtcctctctgctgctttcacactggaaaacacatgcacacactggaataggagatatg
caagggagtaatgaactaggggaaatggaggtatcagctgatgagaaaaaaggatcagaa
ttggtcaaattttggaatgctgctgaagaaagtattaaaggttgcacactgaatggaaaa
ataaaggagagagaaggagatgtggaccaaaatacagcggataaagtaggacatgagaaa
agtgacaataacatcattgaaataaaggaagaaaagattgggaatgaaaaggatgagatg
agtgttggtctcctggactcctgtaccctcgtggaaggactacttttcccagcagagtac
tatgttcgaactacaagacgtatgacatcgtcacagagtcagcctgacatacaggctgtc
attctctcccagctgagcgcaggccgacatcgcaggagccgtggccgtggcagaggagtc
aacagacacacacatagcagtgaatgttcggatcaacacatacagactgaaatctcccct
ctgacaattgcacctgtacatacaccatcacaagtgagtactgttgatgcgttggctgag
ctcactggtaacagtcctaacttcagcgagatttcaaatgaaatccctcatagtgctact
ccaagaagaggcggaaagagaaaaagaggcaggggaagaggaaggactccgaccccacga
tcctctctcatccatcaagcagcttatgtaaagacctcagaggatctccaacccaccacc
atccctgtctcctcttcacaatctctccatgcacctggtaaaccaaagccacgtcaccct
cttggagagcctgttcctgtggcagatgatagtcaacctgcgtccactgctgcagttaat
gaaactcagagcagcccggcctctggagagctgcagaagctctttcccatctttctgaag
agcagcagcaggacaaacacaaccgcacagataattcagagtacaccgagctgtagatct
ctgctcttgccttcctctccttctgcccacacttctcttcttcctctgtcatggctgacc
tctggctcgctgctcagaaacatgaggaatcttgacatccaccaagattttcatctccct
gatgaccagtttgcctctctgaagctgcacaagctccgcaaagttgccatggaattagaa
catttcacacctccctcttataacactcggagtagcaaccgctacgctcacctctgcccc
agccccagtgaccctgtgatgtcacttcccctcccactcagcctcacgcccatgattgca
aattcacaaaaacaggctgctacacagtctggagatgaacaaaacctgtcagtaggatac
tgtaaacttgcaaatccatctttagctaaagagccatccaaccaagaaaatacagagact
catagagaagaaaagactgaaaacacctcaacagaatctgtgatagtggttcatgatttt
gctgctggttgtttacatcaaacttcagagcaagacactgaaattctgaatgtctcaacc
agcaacacacaaacacctagtgaccggaatgacaaacctcagcttcatgtcagttttgta
gacatgtgtgtagataatgtgaatgattatgaagtcacactttgtgctggggatgtatcg
tctttggaggatcagagtacttcatatcaccaaggagaagacagagctgtcatcaagact
ctttactttgattgcacgcatcaggaaatgcctggggagccttttaacagctgcactgct
gcacagacatgtaatgacagtgaagcttcaggagagtctcctgcgaaacatccttatgtg
aaaactcctgacaaaggcctaaatgagacaattgaagccgccacacatcctcctagagac
agtgcagaggaaaatcagtgtttaccacaccaaagtgtccactctcagctcctgctgagc
cccacacttgcctcagcaccttaccctttcacaaccacatacctgcccccctcagctctc
atctccagccctacacttccttctgtaggactcaccccccaccgtgtttccactgggctc
cccctgacctcttctccctctgcgccagctctcactctgcctcctccccacagtccggca
tctttaaccccctccccacccactctctctccctgtcagtccatcacttccctcccacct
agccagtctctcatctgcagtcacaaccaggcttcgttagaaccaccagatacaggcaat
cagtgtcaggtggtggaaccgacttcctgtccaactgaatcctgcatccagtcacaaggt
tcgagtggtcaggcgggtcagaaaaccgaggagactgcagaacaacacgtgatgagatgc
atggacacactgaaggctccagcaggtggctgtctggtggacacgtgctgtctgcttgga
ccctcaggcgagttgtgtgttgcagcagcagggaagtgggcagtgtgtgtgtggagtcag
accccagcttctgactggaccttaatacacacctggaccttcaatgatcctgtgataaat
gtgtctcccatccctgatgctgctggactgatgattgtgactttgggtcaactggaaatc
agagaagtgaggttgctgtcgtgctccagcctcatgcaagtgctgctgtgtgagggggtt
gtccaggctgctgtgggtgtgtccaagtccagggtggtgacctcctcccactcaacaacc
ggttcaaccctgcaggtgtttagcatatcagaccacgacagcacaccaagctctcagcct
cttgtgtctcctggagtttgtatcggggccctcgctccagtggagggactctctgatgct
gtgcttggcacagacgagggggggcgtgtctttgtctggaatttagagacgggacagctg
ctgcgtaaaatcgtcttcggtgacggtttatcacacacagtctgtctgagaggattctcg
tcccgtggagtgttattcgtcctgctgcagcatcagtcgctcagctccctggatgaacaa
gaaaaagaggccaaaggaaaagatggaatcttttcagaggaggaagaggaaactaagaaa
accgccttgttctccttgctcgccgttaacccgctgaacagcaaatctgtggtggctact
cgactgtatccacccaaagcctggtctggcagactgtgtgaggccgatgtcagcagctcc
agagtggtcggtctgagtcagagcggctgtgtgtgcgtgtgggagcttgggcgacaacag
gcctccaggatggtgtgggctcctgagggcgaagggtggcaggtggctcgctggggggga
cgagacacgctggtgaccggtcatctcaacggagatgtcactctgcactgctacagaaaa
ctataa
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