Solea senegalensis (Senegalese sole): 122786507
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Entry
122786507 CDS
T07721
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122786507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122786507
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122786507
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122786507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
7tm_6
Motif
Other DBs
NCBI-GeneID:
122786507
NCBI-ProteinID:
XP_043908803
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All DBs
Position
LG20:20083164..20101094
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AA seq
944 aa
AA seq
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VFFHPGEIDRCLKKVGEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIK
TWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKEKEE
VGMWLTNMIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRHHIRML
ETILRMLDNDSVQVDAIRKIKDDVEYYVDSSQDMDFEENEFLYDDLNLEEIPQALMATSP
PGHSHLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSPVKN
GNPSSSLSSSSSSSSSSSSSSSSSSSVSGLTASSLVSMATIAAGGGGSGGNSHHGSSGGL
LSNISAGSYSNATQQPPHPSTQQQQQAKNSLGSSSLPIPIATINSHPAPLASSPPNAITQ
GPLMSNSQPQAPLGPPPTSNSFGLGLGLSLGKGGMSGSMATSPLSGSLGLSGMPASLSSM
ASLLSSSTPAPYAQAAAVGTVGSGLPGSLGGICTTTSNSAVGSIGSGCVTVGGPTSSSAG
LLGSSVGMGTIGSGILGLGSSQSLVQSSSLMSPGPVGGLAPGSGLGVIGSNGGSSGSSGS
GVIGGNSSLSVRPPSQQKQNGSTSYSAVVADATIESILSSSQSLSSQPSSLTSIANQPVS
SSLLGLFPSKDTGPSLLGSLTLSSSALSPASYSEAKTANISISSSSSNSLLNGPMSYSTM
SSDSIKPQEPLSSLKSMAERAALSSGMEGDLPSLHLTADIFPSSTVASSVSSSAPQSSLS
EVSIAPSLGVCPLGPVPLSKDQLYQQAMEEAAWTHMPHPSDSERIRQYLMRNPCPTLPFH
HQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRH
EEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
gttttctttcatccaggtgaaatagatcgatgtctgaaaaaagtcggggaaggagttgaa
cagtttgaagacatttggcaaaagcttcacaatgcagcaaacgccaaccagaaggagaaa
tatgaggcggacctcaagaaagagattaaaaagctccagcgtcttcgagaccagatcaag
acgtgggtggcctccaacgagatcaaagacaaaaggcagctcgtcgagaatcgcaaactc
atagaaacgcaaatggagcgcttcaagatcgtggagagagaaacgaagaccaaagcctac
tctaaagaaggactgggtctggcacagaaggtggaccctgcccagaaggagaaggaggag
gtcgggatgtggctgacgaacatgatcgacacgttaaacatgcaggtggaccagtttgag
agcgaagtggagtctttgtcggtccagacgagaaaaaagaaaggggacaaagagaagcag
gaccggattgaggagctgaagaagttcatcgagaagcatcgacaccacatcaggatgctg
gagacgatactgaggatgctggacaacgactcagtgcaggtggacgccatcaggaagatc
aaggatgacgtggagtattatgtggactcgtcgcaggatatggacttcgaagagaacgag
ttcctctacgacgacctgaatctggaggaaattcctcaggcgctgatggccacgtcaccg
ccaggacactcgcacttagaggacgagatcttccagcactccagcagcacgcccacctcc
accacctcgtcctcgcccatccccccctcaccggccacgtgcactacggagaactcagag
gacgataagaagagaggacgttcgactgacagtgaagtgagtcagtcgcccgtgaagaac
ggaaacccgtcctcctcgctgtcctcttcctcctcctcctcatcctcctcgtcctcctcg
tcctcgtcctcctcctctgtctcaggactgaccgcatcctcgctggtctctatggcgacc
atcgctgcgggcggcggcggctccggtgggaacagtcaccacggcagctcggggggtttg
ctctccaacatctccgccggcagctacagcaacgccacgcagcagccgccgcacccgtca
acacagcagcagcaacaggccaaaaactcacttggctcctcctcattgcccatccccatc
gccaccatcaacagccaccccgcccccttggcctcctctccccccaacgccatcactcag
gggcccctgatgtcaaactcccagcctcaggctccgttggggcccccgccgacctccaac
agcttcgggctgggtctgggtctgtcgctggggaaaggcggcatgtccggctccatggcc
accagcccgttgtctggtagtctgggtctctcggggatgccggcgtccctgagctccatg
gccagccttctgtccagctccaccccggcaccgtacgctcaggcggccgccgtgggcacc
gtcggctcagggttgccgggctctctgggcggcatctgcaccaccacctccaacagcgcg
gtggggtccatcggcagcgggtgcgttacagtcggcggcccgacgtcctcgtcggccgga
ctgctgggctcgtcggtggggatgggaaccatcggctctgggattctgggtctgggctcg
agccagtcgctggtgcagagttcttctctgatgtcgccgggtccggtgggaggcctcgct
ccagggagtggactgggagtcatcgggagcaacgggggcagctcgggatcgtcggggagc
ggagtcatcggaggaaactcgtcgctctccgtccgaccgccgagtcagcagaagcagaac
ggtagcaccagttacagtgccgtggtcgctgacgccacaatagaatccatcctcagcagc
agccaatcactgagcagccaaccatcgtctttgacctccatagccaatcagcctgtttct
tcctctcttctcggtctctttcccagtaaggacactggtcccagtttactgggctcttta
actctgtcgtcgagcgctctgtccccggcgtcttacagcgaggctaaaactgcaaacatc
agcatcagcagcagcagcagtaacagcctgctgaacggaccaatgtcctactccactatg
tcctctgacagcatcaagccccaggagcctctgagcagcctcaagtccatggctgagcga
gcagcactcagctcagggatggagggagacctgccctcactgcacctcaccgcagacatc
ttccccagtagcaccgtggcctcctccgtctcctcgtcagcaccccagtcctcgctgtca
gaggtcagcatcgctccgtcactgggcgtctgcccgctggggccggttcccctgtccaaa
gaccagctctaccaacaggccatggaggaggcggcgtggacgcacatgccccacccgtcc
gactcggagaggatcaggcagtacctgatgaggaacccgtgtcccaccctgcctttccac
caccaggtgccgccacctcactccgacaccgtggagttctaccagagactctccacagag
acgctcttcttcatcttctactacctggagggcaccaaggctcagtatctggcagccaaa
gctctgaagaaacagtcgtggaggtttcacacaaagtacatgatgtggttccagagacat
gaagaacccaagaccatcacggatgagtttgagcagggaacctacatttactttgactac
gagaaatggggccagaggaagaaagagggtttcacgttcgagtaccggtatctagaagac
cgcgacctccagtga
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