Sphingomonas sinipercae: G7078_10320
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Entry
G7078_10320 CDS
T07461
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssin
Sphingomonas sinipercae
Pathway
ssin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G7078_10320 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssin03400
]
G7078_10320 (ligD)
Enzymes [BR:
ssin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G7078_10320 (ligD)
DNA repair and recombination proteins [BR:
ssin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G7078_10320 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QIL03134
UniProt:
A0A6G7ZQ74
LinkDB
All DBs
Position
complement(1993179..1995686)
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AA seq
835 aa
AA seq
DB search
MARAAKKLDIETYNKKRDFSKTKEPKGRKLKGKGDSFVVQKHEASRLHWDFRLELDGVLK
SWAVPKGPSLDPGTNRLAMRTEDHPLDYGSFEGTIPKAEYGGGTVMLWDQGRWIPHPDKD
PRKTIEEGHLHFTLEGERMKGEWVMFRLKGKPGDSSEAWMLKKVTDEFADADNGDALVSE
CTSSVTTGRTMAEIASGEDVWRSNRGGQKGSRAKKKASDAPPPFEAPQLATLVDEVPAGS
NWLFEYKYDGYRLLIATGSGAATAWTRNGKDWSDKFRGLVKAAADLPPGCLIDGEAVALG
DNGKPDFQLLQSTLKGEKGHNLAFYAFDLLIDRGEDIRKLTNLERKARLQALLADAPSAI
LYGDHIVGKGEALFNAICAEGGEGVIAKKADAPYRAGRSKGWLKIKCINRQEFVIVGWSE
SDRRVGFRSLLLAAKESGKLTYVGKVGTGFNTQMLHDMMDRMKPMEIAKAPVEVPRAERK
GAHFIRPELVCEVAFTEFTSEGILRHPSFIALREDKPAKDVVVETPKSLPKADKPKTAAK
QRKHKTPEDFGIAISNPDRQIFPTEHLTKGDLANYYAAIDPLLMVDAANRPITLIRCPQG
RAKKCFFQKHDTGSMGEHVKHVAIVEKKGGTQDYLCVDDVRGILSCVQMGTIEFHGWGSR
ADKVECPDRLVFDLDPDEGLDFSAVRDAARRLRELLGEMGLETFPLLTGGKGLHVVAPLD
ASADWAAVTSFAERFSRAVAEAEPERFTANMRKVQRKGRIFLDWLRNQRGSTAVLPYSVR
AREGAPVCAPIAWEELDKYRGGNAFTIRDVDRLFERSQSKLLAGWGEANQALPST
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgcggcgaagaaactcgacatcgaaacgtacaacaagaagcgcgacttctcg
aagaccaaggagcccaagggccgcaagctaaagggcaagggcgacagcttcgtcgtccag
aagcatgaggcctctcgcctgcactgggacttccggctcgagctcgacggcgtccttaaa
agctgggcggtgccaaagggtcccagcctcgatcccggcaccaaccgcttggcgatgcgg
accgaggatcacccgctcgattacggcagcttcgaagggacgatcccgaaggccgaatat
ggcggcggcacggtgatgctgtgggaccagggccgctggatcccgcaccccgacaaggac
ccgcgcaagacgatcgaggaaggccacctccacttcacgctggaaggcgagcggatgaag
ggggaatgggtgatgttccgcctgaagggcaagccgggcgacagcagcgaagcgtggatg
ctgaagaaagtcaccgacgaatttgccgatgccgacaatggcgacgcgctggtcagcgaa
tgcaccagcagtgtcaccaccggccggacgatggctgagatcgcgtcaggcgaagacgtc
tggcggtcgaatcgcggcgggcaaaagggcagccgggccaaaaagaaagcgagcgacgcg
ccgccgccgttcgaggcgccgcagctcgctaccttggtcgacgaagtgccggccgggtcg
aactggctgttcgaatataagtatgacggataccggctgctgatcgccaccggcagcggc
gcggcgacggcctggacccgcaacggcaaggactggagcgacaagtttcgcggcttggtc
aaggcggctgccgaccttccgcccggttgccttatcgacggcgaagcggtggcgctgggc
gacaatggcaagcccgattttcagcttttgcaatcgacgctgaagggcgagaagggtcac
aacctggccttctacgccttcgacctgctgatcgaccgcggcgaggacattcgcaagctg
acgaacctggaacgcaaggctcggctgcaggccttgctggccgacgcgccgtcggcgatc
ctttatggcgaccacatcgtgggcaagggcgaggccttgttcaacgccatctgcgcggag
ggcggcgagggcgtgatagccaagaaggccgatgcgccctaccgggccggccggtcgaaa
ggctggctcaagatcaagtgcatcaaccggcaggaattcgtcattgtcggctggtcggaa
agcgaccgccgggtgggtttccgctccttgcttctggcggcgaaggaaagcggcaagctg
acctacgtcggcaaggtcggcaccggcttcaacacgcagatgctgcacgacatgatggat
cggatgaagccgatggagatcgccaaggcgccggtcgaagtgccgcgggccgagcgcaag
ggcgcccacttcatccgccccgagctggtctgcgaagtcgcattcaccgagttcacgtcg
gaaggaatcctgcgccacccgagcttcatcgcgctgcgcgaggacaagccggcaaaggac
gtggtcgtggaaacaccgaagtctctgccgaaagcggacaagccgaagacggcggccaag
cagcggaagcacaagacgccggaagatttcgggatcgcgatcagcaatcccgaccgccag
attttcccgaccgagcacctgaccaagggcgaccttgccaattattatgcggcgatcgac
ccgctgctgatggtcgacgcagccaaccggccgatcaccctgatccgctgcccccagggc
cgggccaagaagtgctttttccagaagcacgacaccggatcgatgggcgagcacgtcaag
cacgtcgcgatcgtcgagaaaaagggcgggacgcaggattacctttgcgtggacgacgtt
cgcggcatcctgtcgtgcgttcagatgggtacgatcgaattccacggctggggcagccgc
gccgacaaggtcgagtgtccggaccgcctggtgtttgacctcgaccctgacgaggggctc
gacttcagcgccgtgcgcgatgcggcgcggcggttgcgggagctgcttggcgagatgggg
ctggaaacgtttccgctgctgaccggcggcaagggcctgcatgtcgtcgccccgttggat
gcgtcggcggattgggcggcggtgaccagcttcgccgagcgcttttcccgcgcggttgcg
gaagccgaaccagagcgcttcaccgccaacatgcgcaaggtacagcgcaagggccgcatc
ttcctcgattggcttcgcaaccagcgcgggtccaccgcggtattgccttattcggttcgg
gcccgcgagggcgcgccagtgtgcgcgccaatcgcctgggaggaattggacaagtataga
ggcggcaatgcctttacgatccgcgacgtcgatcgcctgttcgaacgttcgcaatccaag
ctgctcgccggctggggagaagcgaaccaagcgcttccttcgacctga
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