KEGG   Sphingomonas sinipercae: G7078_10320
Entry
G7078_10320       CDS       T07461                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ssin  Sphingomonas sinipercae
Pathway
ssin03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ssin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    G7078_10320 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssin03400]
    G7078_10320 (ligD)
Enzymes [BR:ssin01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     G7078_10320 (ligD)
DNA repair and recombination proteins [BR:ssin03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     G7078_10320 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: QIL03134
UniProt: A0A6G7ZQ74
LinkDB
Position
complement(1993179..1995686)
AA seq 835 aa
MARAAKKLDIETYNKKRDFSKTKEPKGRKLKGKGDSFVVQKHEASRLHWDFRLELDGVLK
SWAVPKGPSLDPGTNRLAMRTEDHPLDYGSFEGTIPKAEYGGGTVMLWDQGRWIPHPDKD
PRKTIEEGHLHFTLEGERMKGEWVMFRLKGKPGDSSEAWMLKKVTDEFADADNGDALVSE
CTSSVTTGRTMAEIASGEDVWRSNRGGQKGSRAKKKASDAPPPFEAPQLATLVDEVPAGS
NWLFEYKYDGYRLLIATGSGAATAWTRNGKDWSDKFRGLVKAAADLPPGCLIDGEAVALG
DNGKPDFQLLQSTLKGEKGHNLAFYAFDLLIDRGEDIRKLTNLERKARLQALLADAPSAI
LYGDHIVGKGEALFNAICAEGGEGVIAKKADAPYRAGRSKGWLKIKCINRQEFVIVGWSE
SDRRVGFRSLLLAAKESGKLTYVGKVGTGFNTQMLHDMMDRMKPMEIAKAPVEVPRAERK
GAHFIRPELVCEVAFTEFTSEGILRHPSFIALREDKPAKDVVVETPKSLPKADKPKTAAK
QRKHKTPEDFGIAISNPDRQIFPTEHLTKGDLANYYAAIDPLLMVDAANRPITLIRCPQG
RAKKCFFQKHDTGSMGEHVKHVAIVEKKGGTQDYLCVDDVRGILSCVQMGTIEFHGWGSR
ADKVECPDRLVFDLDPDEGLDFSAVRDAARRLRELLGEMGLETFPLLTGGKGLHVVAPLD
ASADWAAVTSFAERFSRAVAEAEPERFTANMRKVQRKGRIFLDWLRNQRGSTAVLPYSVR
AREGAPVCAPIAWEELDKYRGGNAFTIRDVDRLFERSQSKLLAGWGEANQALPST
NT seq 2508 nt   +upstreamnt  +downstreamnt
atggcgcgcgcggcgaagaaactcgacatcgaaacgtacaacaagaagcgcgacttctcg
aagaccaaggagcccaagggccgcaagctaaagggcaagggcgacagcttcgtcgtccag
aagcatgaggcctctcgcctgcactgggacttccggctcgagctcgacggcgtccttaaa
agctgggcggtgccaaagggtcccagcctcgatcccggcaccaaccgcttggcgatgcgg
accgaggatcacccgctcgattacggcagcttcgaagggacgatcccgaaggccgaatat
ggcggcggcacggtgatgctgtgggaccagggccgctggatcccgcaccccgacaaggac
ccgcgcaagacgatcgaggaaggccacctccacttcacgctggaaggcgagcggatgaag
ggggaatgggtgatgttccgcctgaagggcaagccgggcgacagcagcgaagcgtggatg
ctgaagaaagtcaccgacgaatttgccgatgccgacaatggcgacgcgctggtcagcgaa
tgcaccagcagtgtcaccaccggccggacgatggctgagatcgcgtcaggcgaagacgtc
tggcggtcgaatcgcggcgggcaaaagggcagccgggccaaaaagaaagcgagcgacgcg
ccgccgccgttcgaggcgccgcagctcgctaccttggtcgacgaagtgccggccgggtcg
aactggctgttcgaatataagtatgacggataccggctgctgatcgccaccggcagcggc
gcggcgacggcctggacccgcaacggcaaggactggagcgacaagtttcgcggcttggtc
aaggcggctgccgaccttccgcccggttgccttatcgacggcgaagcggtggcgctgggc
gacaatggcaagcccgattttcagcttttgcaatcgacgctgaagggcgagaagggtcac
aacctggccttctacgccttcgacctgctgatcgaccgcggcgaggacattcgcaagctg
acgaacctggaacgcaaggctcggctgcaggccttgctggccgacgcgccgtcggcgatc
ctttatggcgaccacatcgtgggcaagggcgaggccttgttcaacgccatctgcgcggag
ggcggcgagggcgtgatagccaagaaggccgatgcgccctaccgggccggccggtcgaaa
ggctggctcaagatcaagtgcatcaaccggcaggaattcgtcattgtcggctggtcggaa
agcgaccgccgggtgggtttccgctccttgcttctggcggcgaaggaaagcggcaagctg
acctacgtcggcaaggtcggcaccggcttcaacacgcagatgctgcacgacatgatggat
cggatgaagccgatggagatcgccaaggcgccggtcgaagtgccgcgggccgagcgcaag
ggcgcccacttcatccgccccgagctggtctgcgaagtcgcattcaccgagttcacgtcg
gaaggaatcctgcgccacccgagcttcatcgcgctgcgcgaggacaagccggcaaaggac
gtggtcgtggaaacaccgaagtctctgccgaaagcggacaagccgaagacggcggccaag
cagcggaagcacaagacgccggaagatttcgggatcgcgatcagcaatcccgaccgccag
attttcccgaccgagcacctgaccaagggcgaccttgccaattattatgcggcgatcgac
ccgctgctgatggtcgacgcagccaaccggccgatcaccctgatccgctgcccccagggc
cgggccaagaagtgctttttccagaagcacgacaccggatcgatgggcgagcacgtcaag
cacgtcgcgatcgtcgagaaaaagggcgggacgcaggattacctttgcgtggacgacgtt
cgcggcatcctgtcgtgcgttcagatgggtacgatcgaattccacggctggggcagccgc
gccgacaaggtcgagtgtccggaccgcctggtgtttgacctcgaccctgacgaggggctc
gacttcagcgccgtgcgcgatgcggcgcggcggttgcgggagctgcttggcgagatgggg
ctggaaacgtttccgctgctgaccggcggcaagggcctgcatgtcgtcgccccgttggat
gcgtcggcggattgggcggcggtgaccagcttcgccgagcgcttttcccgcgcggttgcg
gaagccgaaccagagcgcttcaccgccaacatgcgcaaggtacagcgcaagggccgcatc
ttcctcgattggcttcgcaaccagcgcgggtccaccgcggtattgccttattcggttcgg
gcccgcgagggcgcgccagtgtgcgcgccaatcgcctgggaggaattggacaagtataga
ggcggcaatgcctttacgatccgcgacgtcgatcgcctgttcgaacgttcgcaatccaag
ctgctcgccggctggggagaagcgaaccaagcgcttccttcgacctga

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