Sphingobacterium siyangense: JVX97_18080
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Entry
JVX97_18080 CDS
T08059
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ssiy
Sphingobacterium siyangense
Pathway
ssiy03030
DNA replication
ssiy03430
Mismatch repair
ssiy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JVX97_18080
03430 Mismatch repair
JVX97_18080
03440 Homologous recombination
JVX97_18080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssiy03032
]
JVX97_18080
03400 DNA repair and recombination proteins [BR:
ssiy03400
]
JVX97_18080
Enzymes [BR:
ssiy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JVX97_18080
DNA replication proteins [BR:
ssiy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JVX97_18080
DNA repair and recombination proteins [BR:
ssiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JVX97_18080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
HHH_3
Phytochelatin
Motif
Other DBs
NCBI-ProteinID:
QRY55927
LinkDB
All DBs
Position
4245469..4248519
Genome browser
AA seq
1016 aa
AA seq
DB search
MYLNCHSFHSLRYGTLSIDDLVSQASALGIKELVLTDINTVTGIYEFKRKCEENNIRPIV
GVEVRMDSELLYIAIAKDFSGLGEVNKILTAYNCDDIELPSQPDLKNNFIIYPLNCFPDE
LEENEFIGIRKEELNLLIRPDLKKFIPKMVILHPITFSTKKEYNLHRILRAIDNNTLLSM
LPETEVCTKAEYFESPQTILGTYRHYPQIIENTQMLLAGCNFEFQAGTPRNKKHYTGTKA
DDLKLLTRLTYAGLERRYGRKHQQAIERVEKELKVIDELNFSGYFLITWDIIRYSNSMGF
MHVGRGSGANSIVAYCLGITDICPIELDLYFERFLNLNRKSPPDFDIDWSWQERDVILDY
IFNRYGKDYVAFCGTNVEFKYRSIIREVGKAFGLPKDELDTLSKNPERVFSDKVIQQVQK
YGMLLQKFPNQRSMHSCGIIISEEPLTNFTALEMPPKGFPIVQWDMHVAEEIGFEKFDIL
SQRGLGTINDTVRLLEEKRGIKVNIKDTTISKDEKICNEYLSMGKTIGCFYIESPAMRGL
LRKLKCDNYKVLVAASSIIRPGVAQSGMMTEYVFRHNNPDKFEYFHPVFEQQLGETYGIM
VYQEDVIKIALHYGGVSAADGDILRRAMSGKGRSISALQKVKDDFFASCRQQGHPEQLSR
EIYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYYPLEFMVSAINNMGGFYRTEVYVHE
AKMSGGKILNPCVNKSEYETTIFDNDIYLGLMLLENVETKIAKLIPEERRKNGEFRSMEA
FIRRIPVGIETLQTFILIGAFRFTGVPKNELLIRARLLLGECKPQNKLQTLFEEPIKEFK
FPELKRNIFEDAFDEIEILSFPVSCTPFDLLRTKYRGSTMAKDLTSCHKKQVKMLGYLIS
RKHVPTNRGTMFFGTWIDVNGDYFDTAHFADCLEKYPFQGGGCYLLLGIVEVNFNFPTVT
ISKMAKMPFIADPRYYHDEEKKYEVQHRIKEDVSMTFRAPYPQQHEIGLPRHKAIS
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgtatctgaactgtcattcctttcacagtctgcgttatggaacgctttccatcgacgac
cttgtttcccaggcttccgccctgggtataaaagaactcgttcttacagatatcaataca
gttaccggaatctacgaatttaagcgaaaatgtgaagagaacaatatccggcctattgtt
ggggttgaagtaaggatggacagtgaattgttatatatagctattgctaaagatttctca
ggattaggggaagtgaataagattttaaccgcttataattgtgatgatattgaacttccc
agccagcctgatctaaaaaacaactttataatctatccattaaactgttttccagatgaa
ctagaggaaaatgaatttattggtatacggaaagaagaactgaatcttcttattaggcca
gacctgaaaaagttcattccgaaaatggtcattcttcaccctatcacattcagtacaaaa
aaagaatataacctgcaccggattttgagggcaatcgataataatacattgttgtcaatg
ctgcctgaaacagaggtttgcacaaaagcagaatattttgaatctccacaaactatctta
ggaacataccgacattatccgcagattattgaaaatacacaaatgcttctcgcaggttgc
aattttgaatttcaagctggaacaccaagaaacaaaaagcattatacaggtacaaaagcc
gatgacctgaaactgctcactagattgacatatgctggacttgaacgaaggtatggtaga
aaacatcagcaagctatcgaacgggtagaaaaggagctaaaggttatagatgagcttaac
tttagtggttattttctgattacatgggatattataagatacagcaatagcatgggattc
atgcatgtcggaagggggagtggtgccaattcaattgtcgcttactgcctggggattacc
gatatatgcccaattgaacttgacctgtactttgagcggtttttaaacctgaaccgtaaa
agtccgcccgattttgatatcgactggtcttggcaggaaagggatgttatcctggattat
atctttaaccgttatggaaaggattatgttgccttttgtggaaccaatgtcgaattcaaa
taccggtcaatcatccgtgaagtaggaaaagcgttcggacttccaaaagatgaactggat
accctgagcaaaaatcccgaacgtgtttttagtgataaagtgattcagcaggtacaaaaa
tatggaatgctcctgcagaagtttccgaaccagcggagcatgcattcctgcggaattatt
atttctgaggaacctttaacaaactttaccgctttggaaatgccacctaaaggatttccg
atcgttcaatgggatatgcatgtagcagaggaaattggatttgaaaaatttgatatcctt
tcccagcgtggtcttggaaccataaatgatactgtaaggcttttggaagagaaacgcggt
atcaaggttaacatcaaagatacaacgatctccaaagatgaaaaaatatgcaatgagtat
ttgagtatgggaaagaccatagggtgtttttatattgaatcacctgccatgcggggcttg
ctccggaaattgaaatgtgacaattataaggttctggttgccgcctcctccatcatccgt
ccgggcgttgcacagagcggaatgatgacagaatatgttttccggcacaataacccagat
aagtttgagtattttcatcctgtttttgagcagcagcttggtgaaacttacggcattatg
gtctaccaggaagatgtgataaagatcgcattgcactatggtggcgtatctgcagccgat
ggcgatatcctcagaagggctatgagcggaaaaggaaggtcaatttcggctttgcagaaa
gttaaggacgattttttcgcatcttgcaggcagcaggggcatcctgagcagctgagccgg
gaaatttataggcagattgaatcttttgcgggatattcattctgcaaggcacattctgca
tcttatgctgtagagagttaccagagtttgtatctgaaagtgtactacccattagagttc
atggtttctgccatcaacaatatgggtgggttttacaggacggaagtctatgtgcatgaa
gcaaagatgtccggaggtaagatccttaatccatgcgttaacaaaagcgagtatgaaacg
acgatatttgataatgacatttatcttggtttgatgctgttggaaaacgttgaaactaaa
atcgcaaagttgatccccgaggaaagaaggaaaaatggagagttcaggtcgatggaagcc
tttatcaggcgcatacctgttggaatagagacattgcagacttttattttgatcggggcc
ttccggtttacaggggttccgaagaatgagctgttgatcagggcacgcctcttattggga
gaatgtaaacctcagaataaattacagacgctctttgaggagccgatcaaagaatttaag
tttcctgagctgaagcgtaatatctttgaggatgcttttgacgaaatcgagattctcagt
tttccggtatcgtgtacaccttttgatcttttacggaccaaatacaggggtagcacaatg
gctaaggatctgacctcgtgccataaaaagcaggtcaagatgcttgggtatctcatttca
agaaagcacgttccaaccaatagggggacaatgttttttggaacctggattgatgtgaat
ggtgattactttgacacggcccattttgcggactgccttgaaaaatatccttttcagggt
gggggatgctatttgttattgggtattgttgaggtaaattttaactttcctactgttact
atcagtaagatggcgaagatgcctttcattgcagatccccgttattaccatgacgaggaa
aaaaaatacgaagtacagcatcgtatcaaggaggatgtcagtatgacctttcgtgcacct
tatccgcaacagcatgaaattggattgcccagacataaagcaatttcctaa
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