Sediminispirochaeta smaragdinae: Spirs_3179
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Entry
Spirs_3179 CDS
T01287
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spirs_3179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssm03021
]
Spirs_3179
03019 Messenger RNA biogenesis [BR:
ssm03019
]
Spirs_3179
Transcription machinery [BR:
ssm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Spirs_3179
Messenger RNA biogenesis [BR:
ssm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Spirs_3179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_22
ATPase_2
NACHT
OB_RNB
AAA
AAA_25
SAP
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADK82277
UniProt:
E1R5E9
LinkDB
All DBs
Position
complement(3402663..3404243)
Genome browser
AA seq
526 aa
AA seq
DB search
MDEMNVNEPNEEKKPEEKNQMTTVVAKRKPRRKKVRVELIKESTDVDKDDNQQNTGDESL
IPPDKVGVSKNGEDDDPVIAARPSGRRGRGRKPGDNGEREEKPRLSINDLSQMTVPDLRD
FAANLGISRDNLITMKKQEIIFAVLKNHTQSGGAISAYGSLEILPDGYGFLRSPQNSYLP
GPDDIYISPSQIRLFNLKTGDTVSGQIRPPKEGERFFAMLRVEEVNYDDPSVAQTRVSFD
SLTPLYPDTRINMETVSGDFSTRMINLFCPIGKGQRGLIVSPPRTGKTILLQKIANAITE
NHPEISVIVLLIDERPEEVTDMRRNVKGEVIASTFDEQATRHVQVAEMVIEKAKRLVEHK
RDVVILLDSITRLARAYNQTVPTSGKILSGGVDSNALHKPKRFFGAARNIEHGGSLTIVA
TALIETGSRMDEVIFEEFKGTGNMEINLDRRMSDRRLFPAINIKKSGTRKEELLLTDEEL
NKMWVLRKVINPMDDIETTELMIDRMRKTKNNEAFLKSMNTTSGEM
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgaatgtgaatgaaccaaacgaagaaaaaaagccggaagaaaaaaatcaa
atgacgacagtcgttgcaaagagaaagccgagaagaaaaaaagtacgggtggaattgatc
aaagaatcgacagatgtcgataaagatgataaccaacaaaacacaggcgatgaaagtttg
atccctcctgataaagtcggtgtcagcaaaaatggagaagatgatgatcctgttatagca
gctcgtccctccggtcgaagaggtagggggagaaagcctggcgataatggagagagggaa
gagaaaccccgtctttctattaatgatctttcgcagatgaccgttcccgaccttcgtgat
tttgccgcaaatcttggtatcagtagagacaacctgatcaccatgaaaaaacaggagatc
atttttgctgttttgaaaaatcatacccaaagtggcggtgccatttctgcttatggttct
cttgagattcttcccgacggttatggctttctgcgttccccccaaaatagttatctgccc
ggtcctgatgacatttatatttctccaagccaaatcaggctttttaatttgaaaacaggg
gacaccgtatccgggcagatccgtcctccgaaagagggtgagcgtttttttgccatgcta
cgggtagaggaagtcaactatgatgatccaagtgtcgcccagacaagggtttccttcgat
agcctgacccccctctatccggatacaaggatcaacatggagactgtttcgggggatttt
tccaccaggatgattaatcttttctgtcctattggaaaagggcagagaggcttgatcgta
tctcctccccgaacgggaaagactattttgcttcaaaagattgccaatgccattacggag
aatcatcccgaaatatcggttattgttcttttaattgatgaacgtcccgaagaagtgacc
gatatgcggcgtaacgtcaagggagaggtcattgcttccaccttcgatgaacaggcaaca
cgccatgttcaggttgccgagatggttattgaaaaggcaaaacgacttgttgagcataag
agagatgttgttattcttcttgattccattacccgtctggcccgtgcctataaccagacg
gttccgacgagcggaaaaattctctccggtggagtggattccaacgcacttcacaaaccg
aagcggttcttcggtgcggcgcgcaatatcgaacatggtggaagtcttaccatcgttgcg
actgcattgatcgaaaccggctcaagaatggatgaggttatctttgaagagtttaagggc
accggcaacatggaaatcaaccttgaccgacgaatgtccgatcgtcgactttttcctgcc
atcaacatcaagaaatcgggaacaaggaaagaggagctgctcttaaccgatgaggaactc
aacaaaatgtgggttctgcgcaaggttatcaaccccatggatgatatagagactaccgag
ttgatgattgacagaatgcggaaaacgaagaataatgaggccttcctgaagtctatgaat
accacttcaggagagatgtag
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